Publications by Hiroshi Sugimoto, Ph.D.

 

[2023]

  1. Suzuki, K., Stanfield, J.K., Omura, K., Shisaka, Y., Ariyasu, S., Kasai, C., Aiba, Y., Sugimoto, H., Shoji, O., “A compound I mimic reveals the transient active species of a cytochrome P450 Enzyme: insight into the stereoselectivity of P450-catalysed oxidations”, Angew. Chem. Int. Ed., 62, e202381362 (2023) [doi]

[2022]

  1. Lučić, M., Wilson, M.T., Tosha, T., Sugimoto, H., Shilova, A., Axford, D., Owen, R.L., Hough, M.A., Worrall, J.A.R., “Serial Femtosecond Crystallography Reveals the Role of Water in the One- or Two-Electron Redox Chemistry of Compound I in the Catalytic Cycle of the B-Type Dye-Decolorizing Peroxidase DtpB”, ACS Catal., 12, 13349-13359 (2022) [doi]
  2. Moreno-Chicano, T., Carey, L.M., Axford, D., Beale, J.H., Doak, R.B., Duyvesteyn, H.M.E., Ebrahim, A., Henning, R.W., Monteiro, D.C.F., Myles, D.A., Owada, S., Sherrell, D.A., Straw, M.L., Srajer, V., Sugimoto, H., Tono, K., Tosha, T., Tews, I., Trebbin, M., Strange, R.W., Weiss, K.L., Worrall, J.A.R., Meilleur, F., Owen, R.L., Ghiladi, R.A., Hough, M.A., “Complementarity of neutron, XFEL and synchrotron crystallography for defining the structures of metalloenzymes at room temperature”, IUCrJ, 9, 610-624 (2022) [doi]
  3. Shisaka, Y., Sakakibara, E., Suzuki, K., Stanfield, J.K., Onoda, H., Ueda, G., Hatano, M., Sugimoto, H., Shoji, O., “Tetraphenylporphyrin Enters the Ring: First Example of a Complex Between Highly Bulky Porphyrins and a Protein”, ChemBioChem, e202200095 (2022) [doi]
  4. Yogo, Y., Yasuda, K., Takita, T., Yasukawa, K., Iwai, Y., Nishikawa, M., Sugimoto, H., Ikushiro, S., Sakaki, T. "Metabolism of non-steroidal anti-inflammatory drugs (NSAIDs) by Streptomyces griseolus CYP105A1 and its variants". Drug Metab. Pharmacokinet. 100455 (2022) [doi]
  5. Takiguchi, A., Sakakibara, E., Sugimoto, H., Shoji, O., Shinokubo, H. "A heme-acquisition protein reconstructed with a cobalt 5-oxaporphyrinium cation and its growth-inhibition activity toward multidrug-resistant Pseudomonas aeruginosa". Angew. Chem. Int. Ed. 61, e2021124 (2022) [doi]
    6.  

[2021]

  1. Mukai, K., Sugimoto, H., Kamiya, K., Suzuki, R., Matsuura, T., Hishiki, T., Shimada, H., Shiro, Y., Suematsu, M., Kagawa, N. "Spatially restricted substrate-binding site of cortisol-synthesizing CYP11B1 limits multiple hydroxylations and hinders aldosterone synthesis". Curr. Res. Struct. Biol. 3, 192-205 (2021) [doi]
  2. Nomura, T., Kimura, T., Kanematsu, T., Yamada, D., Yamashita, K., Hirata, K., Ueno, G., Murakami, H., Hisano, T., Yamagiwa, R., Takeda, H., Gopalasingam, C., Kousaka, T., Yanagisawa, S., Shoji, O., Kumasaka, T., Yamamoto, M., Takano, Y., Sugimoto, H., Tosha, T., Kubo, M., Shiro, Y.: "Short-lived intermediate in N2O generation by P450 NO reductase captured by time-resolved IR spectroscopy and XFEL crystallography", Proc. Nat. Acad. Sci. ,118, e2101481118 (2021) [doi]
  3. Kwon, H., Basran, J., Pathak, C., Hussain, M., Freeman, S. L., Fielding, A. J., Bailey, A. J., Stefanou, N., Sparkes, H. A., Tosha, T., Yamashita, K., Hirata, K., Murakami, H., Ueno, G., Ago, H., Tono, K., Yamamoto, M., Sawai, H., Shiro, Y., Sugimoto, H., Raven, E., Moody, P. C. E.: "XFEL Crystal Structures of Peroxidase Compound II" Angew. Chem. Int. Ed. 60, 14578-14585 (2021) [doi]
  4. Nishinaga, M., Sugimoto, H., Nishitani, Y., Nagai, S., Nagatoishi, S., Muraki, N., Tosha, T., Tsumoto, K., Aono, S., Shiro, Y., Sawai, H.: "Heme controls the structural rearrangement of its sensor protein mediating the hemolytic bacterial survival" Commun. Biol. 4, 467 (2021) [doi]
    5.  

[2020]

  1. Yonemura, K., Ariyasu, S., Stanfield, J.K., Suzuki, K., Onoda, H., Kasai, C., Sugimoto, H., Aiba, Y., Watanabe, Y., Shoji, O., “Systematic Evolution of Decoy Molecules for the Highly Efficient Hydroxylation of Benzene and Small Alkanes Catalyzed by Wild-Type Cytochrome P450BM3”, ACS Catal., 10, 9136-9144 (2020) [doi]
  2. Lučić, M., Svistunenko, D.A., Wilson, M.T., Chaplin, A.K., Davy, B., Ebrahim, A., Axford, D., Tosha, T., Sugimoto, H., Owada, S., Dworkowski, F.S.N., Tews, I., Owen, R.L., Hough, M.A., Worrall, J.A.R., “Serial Femtosecond Zero Dose Crystallography Captures a Water-Free Distal Heme Site in a Dye-Decolorising Peroxidase to Reveal a Catalytic Role for an Arginine in FeIV=O Formation”, Angew. Chem. Int. Ed., 59, 21656-21662 (2020) [doi]
  3. Stanfield, J.K., Omura, K., Matsumoto, A., Kasai, C., Sugimoto, H., Shiro, Y., Watanabe, Y., Shoji, O., “Crystals in Minutes: Instant On-Site Microcrystallisation of Various Flavours of the CYP102A1 (P450BM3) Haem Domain”, Angew. Chem. Int. Ed., 59, 7611-7618 (2020) [doi]
  4. Horitani, M., Kusubayashi, K., Oshima, K., Yato, A., Sugimoto, H., Watanabe, K., “X-ray crystallography and electron paramagnetic resonance spectroscopy reveal active site rearrangement of cold-adapted inorganic pyrophosphatase”, Sci. Rep., 10, 4368 (2020) [doi]
  5. Suga, M., Shimada, A., Akita, F., Shen, J.R., Tosha, T., Sugimoto, H., “Time-resolved studies of metalloproteins using X-ray free electron laser radiation at SACLA”, Biochim. Biophys. Acta Gen. Subj., 1864, 129466 (2020) [doi]
    6.  

[2019]

  1. Moreno-Chicano, T., Ebrahim, A., Axford, D., Appleby, M.V., Beale, J.H., Chaplin, A.K., Duyvesteyn, H.M.E., Ghiladi, R.A., Owada, S., Sherrell, D.A., Strange, R.W., Sugimoto, H., Tono, K., Worrall, J.A.R., Owen, R.L., Hough, M.A., “High-throughput structures of protein-ligand complexes at room temperature using serial femtosecond crystallography”, IUCrJ, 6, 1074-1085 (2019) [doi]
  2. Pek, R.H., Yuan, X., Rietzschel, N., Zhang, J., Jackson, L., Nishibori, E., Ribeiro, A., Simmons, W., Jagadeesh, J., Sugimoto, H., Alam, M.Z., Garrett, L., Haldar, M., Ralle, M., Phillips, J.D., Bodine, D.M., Hamza, I., “Hemozoin produced by mammals confers heme tolerance”, eLIFE, 8, e49503 (2019) [doi]
  3. Yanagisawa, S., Kayama, K., Hara, M., Sugimoto, H., Shiro, Y., Ogura, T., “UV resonance Raman characterization of a substrate bound to human indoleamine 2,3-dioxygenase 1”, Biophys. J., 117, 706-716 (2019) [doi]
  4. Tamura, K., Sugimoto, H., Shiro, Y., Sugita, Y., “Chemo-mechanical coupling in the transport cycle of a heme ABC transporter”, J. Phys. Chem. B, 123, 7270-7281 (2019) [doi]
  5. Shisaka, Y., Iwai, Y., Yamada, S., Uehara, H., Tosha, T., Sugimoto, H., Shiro, Y., Stanfield, J.K., Ogawa, K., Watanabe, Y., Shoji, O., “Hijacking the heme acquisition system of Pseudomonas aeruginosa for the delivery of phthalocyanine as an antimicrobial”, ACS Chem. Biol., 14, 1637-1642 (2019) [doi]
  6. Sakakibara, E., Shisaka, Y., Onoda, H., Koga, D., Xu, N., Ono, T., Hisaeda, Y., Sugimoto, H., Shiro, Y., Watanabe, Y., Shoji, O., “Highly malleable haem-binding site of the haemoprotein HasA permits stable accommodation of bulky tetraphenylporphycenes”, RSC Adv., 9, 18697-18702 (2019) [doi]
  7. Ebrahim, A., Moreno-Chicano, T., Appleby, M.V., Chaplin, A.K., Beale, J.H., Sherrell, D.A., Duyvesteyn, H.M.E., Owada, S., Tono, K., Sugimoto, H., Strange, R.W., Worrall, J.A.R., Axford, D., Owen, R.L., Hough, M.A., “Dose-resolved serial synchrotron and XFEL structures of radiation-sensitive metalloproteins”, IUCrJ, 6, 543-551 (2019) [doi]
  8. Yoshitani, K., Ishii, E., Taniguchi, K., Sugimoto, H., Shiro, Y., Akiyama, Y., Kato, A., Utsumi, R., Eguchi, Y., “Identification of an internal cavity in the PhoQ sensor domain for PhoQ activity and SafA-mediated control”, Biosci. Biotechnol. Biochem., 83, 684-694 (2019) [doi]
    9.  

[2018]

  1. Ganasen, M., Togashi, H., Takeda, H., Asakura, H., Tosha, T., Yamashita, K., Hirata, K., Nariai, Y., Urano, T., Yuan, X., Hamza, I., Mauk, A.G., Shiro, Y., Sugimoto, H., Sawai, H., “Structural basis for promotion of duodenal iron absorption by enteric ferric reductase with ascorbate”, Commun. Biol., 1 120 (2018) [doi]
  2. Omura, K., Aiba, Y., Onoda, H., Stanfield, J.K., Ariyasu, S., Sugimoto, H., Shiro, Y., Shoji, O., Watanabe, Y., “Reconstitution of full-length P450BM3 with an artificial metal complex by utilising the transpeptidase Sortase A”, Chem. Comm., 54 7892-7895 (2018) [doi]
  3. Onoda, H., Shoji, O., Suzuki, K., Sugimoto, H., Shiro, Y., Watanabe, Y., “α-Oxidative decarboxylation of fatty acids catalysed by cytochrome P450 peroxygenases yielding shorter-alkyl-chain fatty acids”, Catal. Sci. Technol., 8 434-442 (2018) [doi]
  4. Yasuda, K., Sugimoto, H., Hayashi, K., Takita, T., Yasukawa, K., Ohta, M., Kamakura, M., Ikushiro, S., Shiro, Y., Sakaki, T., “Protein engineering of CYP105s for their industrial uses”, Biochim. Biophys. Acta Proteins and Proteomics, 1866 23-31 (2018) [doi]
  • 杉本宏, 城宜嗣, “ヘム輸送体の立体構造と基質輸送メカニズム”, 生物物理, 335 5-8 (2018) [doi]
 

[2017]

  1. Oohora, K., Meichin, H., Kihira, Y., Sugimoto, H., Shiro, Y., Hayashi, T. "Manganese(V) porphycene complex responsible for inert C–H bond hydroxylation in a myoglobin matrix". J. Am. Chem. Soc. 139, 18460-18463 (2017) [doi]
  2. Tosha, T., Nomura, T., Nishida, T., Saeki, N., Okubayashi, K., Yamagiwa, R., Sugahara, M., Nakane, T., Yamashita, K., Hirata, K., Ueno, G., Kimura, T., Hisano, T., Muramoto, K., Sawai, H., Takeda, H., Mizohata, E., Yamashita, A., Kanematsu, Y., Takano, Y., Nango, E., Tanaka, R., Nureki, O., Shoji, O., Ikemoto, Y., Murakami, H., Owada, S., Tono, K., Yabashi, M., Yamamoto, M., Ago, H., Iwata, S., Sugimoto, H., Shiro, Y., Kubo, M. "Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate". Nat. Commun. 8, 1585 (2017) [doi]
  3. Naoe, Y., Nakamura, N., Rahman, M. M., Tosha, T., Nagatoishi, S., Tsumoto, K., Shiro, Y., Sugimoto, H. "Structural basis for binding and transfer of heme in bacterial heme-acquisition systems". Proteins 85, 2217-2230 (2017) [doi]
  4. Uehara, H., Shisaka, Y., Nishimura, T., Sugimoto, H., Shiro, Y., Miyake, Y., Shinokubo, H., Watanabe, Y., Shoji, O. "Construction and crystal structure analysis of heme proteins containing ion(III)-5, 15-diphenyl-porphyrin and its derivatives as an artificial prosthetic group". Angew. Chem. Int. Ed. i56, 15279-15283 (2017) [PubMed]
  5. Terasaka, E., Yamada, K., Wang, P. H., Hosokawa, K., Yamagiwa, R., Matsumoto, K., Ishii, S., Mori, T., Yagi, K., Sawai, H., Arai, H., Sugimoto, H., Sugita, Y., Shiro, Y., Tosha, T. "Dynamics of nitric oxide controlled by protein complex in bacterial system" Proc. Natl. Acad. Sci. U.S.A. 114, 9888-9893 (2017) [doi]
  6. Kaori Yasuda, Hiroshi Sugimoto, Keiko Hayashi, Teisuke Takita, Kiyoshi Yasukawa, Miho Ohta, Masaki Kamakura, Shinichi Ikushiro, Yoshitsugu Shiro, Toshiyuki Sakaki "Protein engineering of CYP105s for their industrial uses" [Review Article] Biochim. Biophys. Acta 1866, 23-31 (2018) [doi]
  7. Suzuki, K., Stanfield, J. K., Shoji, O., Yanagisawa, S., Sugimoto, H., Shiro, Y., Watanabe, Y. "Control of stereoselectivity of benzylic hydroxylation catalysed by wild-type cytochrome P450BM3 using decoy molecules." Catal. Sci. Technol. 7, 3332-3338 (2017) [doi]
  8. Shoji, O., Yanagisawa, S., Stanfield, J. K., Suzuki, K., Cong, Z., Sugimoto, H., Shiro, Y., Watanabe, Y., "Direct Hydroxylation of Benzene to Phenol by Cytochrome P450BM3 Triggered by Amino Acid Derivatives." Angew. Chem. Int. Ed. 56, 10324-10329 (2017) [PubMed]
  9. Yasuda, K.,  Yogo, Y.,  Sugimoto, H.,  Mano, H.,  Takita, T., Miho Ohta,  Kamakura, M.,  Ikushiro, S.,  Yasukawa, K.,  Shiro, Y., Sakaki, T. "Production of an active form of vitamin D2 by genetically engineered CYP105A1". Biochem. Biophys. Res. Commun. , 486, 336-341 (2017) [PubMed]
  • 杉本宏 "バクテリアにおけるヘムの獲得と輸送の構造生物学". 日本結晶学会誌 59, 166-173 (2017)
  • 杉本宏 "ヘム輸送タンパク質の立体構造". 感染・炎症・免疫 47, 41-44 (2017)
 

[2016]

  1. Naoe, Y., Nakamura, N., Doi, A., Sawabe, M., Nakamura, H., Shiro, Y., and Sugimoto, H. "Crystal structure of bacterial haem importer complex in the inward-facing conformation. Nature Commun. 13411 (2016). [doi]
  2. Shoji, O., Fujishiroa, T., Nishioa, K., Kanoa, Y., Kimotoa, H., Chiena, S. C., Onodaa, H., Muramatsua, A., Tanakaa, S., Horia, A., Sugimoto, H., Shiro, Y., Watanabe, Y. "A substrate-binding-state mimic of H2O2-dependent cytochrome P450 produced by one-point mutagenesis and peroxygenation of non-native substrates". Catal. Sci. Technol. 6, 5806-5811(2016) [doi]
  3. Sakaguchi, M., Kimura, T., Nishida, T., Tosha, T., Sugimoto, H., Yamaguchi, Y., Yanagisawa, S., Ueno, G., Murakami, H., Ago, H., Yamamoto, M., Ogura, T., Shiro, Y., Kubo, M. "A nearly on-axis spectroscopic system for simultaneously measuring UV-visible absorption and X-ray diffraction in the SPring-8 structural genomics beamline". J. Synchrotron Rad. 23, 334-338 (2016) [PubMed]

[2015]

  1. Doi, A., Nakamura, H., Shiro, Y., Sugimoto, H. "Structure of the response regulator ChrA in the haem-sensing two-component system of Corynebacterium diphtheriae". Acta Crystallogr. F Struct. Biol. Commun. 71, 966-971 (2015) [PubMed]
  2. Cong, Z., Shoji, O., Kasai, C., Kawakami, N., Sugimoto, H., Shiro, Y. & Watanabe, Y. "Activation of wild-type cytochrome P450BM3 by the next generation of decoy molecules: enhanced hydroxylation of gaseous alkanes and crystallographic evidence." ACS Catal. 5, 150-156 (2015) [doi]

[2014]

  1. Takagi, K., Al-Amin, M., Hoshiya, N., Wouters, J., Sugimoto, H., Shiro, Y., Fukuda, H., Shuto, S., Arisawa, M. "Palladium-nanoparticle-catalyzed 1,7-palladium migration involving C-H activation, followed by intramolecular amination: regioselective synthesis of N1-arylbenzotriazoles and an evaluation of their inhibitory activity toward indoleamine 2,3-dioxygenase". J. Org. Chem. 79, 6366-6371 (2014)
  2. Sato, N., Ishii, S., Sugimoto, H., Hino, T., Fukumori, Y., Sako, Y., Shiro, Y., Tosha, T. "Structures of reduced and ligand-bound nitric oxide reductase provide insights into functional differences in respiratory enzymes". Proteins 82, 1258-1271 (2014)
  3. Shirataki, C., Shoji, O., Terada, M., Ozaki, S., Sugimoto, H., Shiro, Y. & Watanabe, Y. "Inhibition of Heme uptake in Pseudomonas aeruginosa by its hemophore (HasAp) bound to synthetic metal complexes." ""Angew. Chem. Int. Ed. 53, 2862-2866 (2014) [PubMed]
  4. Okamoto, Y., Onoda, A., Sugimoto, H., Takano, Y., Hirota, S., Kurtz, D. M., Jr., Shiro, Y. & Hayashi, T. "H2O2-dependent substrate oxidation by an engineered diiron site in a bacterial hemerythrin." Chem. Commun. (Camb) 50, 3421-3423 (2014) [doi]
  5. Hirata, K., Shinzawa-Itoh, K., Yano, N., Takemura, S., Kato, K., Hatanaka, M., Muramoto, K., Kawahara, T., Tsukihara, T., Yamashita, E., Tono, K., Ueno, G., Hikima, T., Murakami, H., Inubushi, Y., Yabashi, M., Ishikawa, T., Yamamoto, M., Ogura, T., Sugimoto, H., Shen, J. R., Yoshikawa, S. & Ago, H. "Determination of damage-free crystal structure of an X-ray-sensitive protein using an XFEL." Nature Methods 11, 734-736 (2014) [PubMed]

[~2013]

  1. Okamoto, Y., Onoda, A., Sugimoto, H., Takano, Y., Hirota, S., Kurtz, D. M., Jr., Shiro, Y. & Hayashi, T. "Crystal Structure, Exogenous Ligand Binding, and Redox Properties of an Engineered Diiron Active Site in a Bacterial Hemerythrin." Inorg. Chem. 52, 13014–13020 (2013) [PubMed]
  2. Yanagisawa, S., Hara, M., Sugimoto, H., Shiro, Y. & Ogura, T. "Resonance Raman study on indoleamine 2,3-dioxygenase: Control of reactivity by substrate-binding." Chem. Phys. 419, 178 (2013) [doi]
    3.  
  3. Fujishiro, T., Shoji, O., Kawakami, N., Watanabe, T., Sugimoto, H., Shiro, Y., Watanabe, Y. "Chiral Substrate Analogues Assisted Stereoselective Epoxidation Catalyzed by H2O2-Dependent Cytochrome P450SPa." Chem. Asian J. 7, 2286 (2012) [PubMed]
  4. Sawai, H., Yamanaka, M., Sugimoto, H., Shiro, Y. & Aono, S. "Structural basis for the transcriptional regulation of heme homeostasis in Lactococcus lactis." J. Biol. Chem. 287, 30755 (2012)) [PubMed]
  5. Sugimoto, H., Shiro, Y. "Diversity and substrate specificity in the structures of steroidogenic cytochrome P450 enzymes". Biol. Pharm. Bull. 35, 818-823 (2012) [PubMed]
  6. Kondo, H., Hanada, Y., Sugimoto, H., Hoshino, T., Garnham, C. P., Davies, P. L., Tsuda, S. "Ice-binding site of snow mold fungus antifreeze protein deviates from structural regularity and high conservation." Proc. Natl. Acad. Sci. U.S.A. 109, 9360-9365 (2012) [PubMed]
  7. Sawai, H., Sugimoto, H., Shiro, Y., Ishikawa, H., Mizutani, Y., Aono, S. "Structural basis for oxygen sensing and signal transduction of the heme-based sensor protein Aer2 from Pseudomonas aeruginosa". Chem Commun (Camb) 48, 6523-6525 (2012) [PubMed]
  8. Matsumoto, Y., Tosha, T., Pisliakov, A. V., Hino, T., Sugimoto, H., Nagano, S., Sugita, Y., Shiro, Y. "Crystal structure of quinol-dependent nitric oxide reductase from Geobacillus stearothermophilus ". Nature Struct. Mol. Biol. 19, 238-245 (2012). [PubMed]
  9. Shiro, Y., Sugimoto, H., Tosha, T., Nagano, S., Hino, T. "Structural basis for nitrous oxide generation by bacterial nitric oxide reductases". Phil. Trans. R. Soc. B 367, 1195-1203 (2012) [PubMed]
    10.  
  10. Hino, T., Nagano, S., Sugimoto, H., Tosha, T., Shiro, Y. "Molecular structures and mechanism of bacterial nitric oxide reductase". Biochim. Biophys. Acta 1817, 680–687 (2011) [PubMed]
  11. Fujishiro, T., Shoji, O., Nagano, S., Sugimoto, H., Shiro, Y., Watanabe, Y. "Crystal structure of H2O2-dependent cytochrome P450SPα with its bound fatty acid substrate: insight into the regioselective hydroxylation of fatty acids at the α position". J. Biol. Chem. 286, 29941-29950 (2011) [PubMed]
  12. Onoda, A., Okamoto, Y., Sugimoto, H., Shiro, Y., Hayashi, T. "Crystal structure and spectroscopic studies of a stable mixed-valent state of the hemerythrin-like domain of a bacterial chemotaxis protein". Inorg. Chem. 50, 4892-4899 (2011) [PubMed]
  13. Makino, M., Sawai, H., Shiro, Y., Sugimoto, H. "Crystal structure of the carbon monoxide complex of human cytoglobin". Proteins 79, 1143-1153 (2011) [PubMed]
  14. Yanagisawa, S., Horitani, M., Sugimoto, H., Shiro, Y., Okada, N., Ogura, T. "Resonance Raman study on the oxygenated and the ferryl-oxo species of indoleamine 2,3-dioxygenase during catalytic turnover". Faraday Discus. 148, 239-247 (2011) [PubMed]
  15. Sakaki, T., Sugimoto, H., Hayashi, K., Yasuda, K., Munetsuna, E., Kamakura, M., Ikushiro, S., Shiro, Y. "Bioconversion of vitamin D to its active form by bacterial or mammalian cytochrome P450". Biochim. Biophys. Acta 1814, 249-256 (2011) [PubMed]
    16.  
  16. Hino, T., Matsumoto, Y., Nagano, S., Sugimoto, H., Fukumori, Y., Murata, T., Iwata, S., Shiro, Y. "Structural basis of biological N2O generation by bacterial nitric oxide reductase". Science 330, 1666-1670 (2010) [PubMed]
  17. Yanagisawa, S., Sugimoto, H., Shiro, Y., Ogura, T. "A specific interaction of L-tryptophan with CO of CO-bound indoleamine 2,3-dioxygenase identified by resonance Raman spectroscopy". Biochemistry 49, 10081-10088 (2010) [PubMed]
  18. Hayashi, K., Yasuda, K., Sugimoto, H. et al "Three-step hydroxylation of vitamin D3 by a genetically engineered CYP105A1: enzymes and catalysis". FEBS J. 277, 3999-4009 (2010) [PubMed]
  19. Chung, L. W., Li, X., Sugimoto, H., Shiro, Y., Morokuma, K. "ONIOM study on a missing piece in our understanding of heme chemistry: bacterial tryptophan 2,3-dioxygenase with dual oxidants". J. Am. Chem. Soc. 132, 11993-12005 (2010) [PubMed]
  20. Nakashima, H., Ikkyu, K., Nakashima, K. et al "Design of novel hypoxia-targeting IDO hybrid inhibitors conjugated with an unsubstituted L-Trp as an IDO affinity moiety". Adv. Exp. Med. Biol. 662, 415-421 (2010) [PubMed]
    21.  
  21. Yanagisawa, S., Yotsuya, K., Hashiwaki, Y., Horitani, M., Sugimoto, H., Shiro, Y., Appelman, E. H., Ogura, T. "Identification of the Fe-O2 and the Fe=O heme species for indoleamine 2,3-dioxygenase during catalytic turnover". Chem. Lett. 39, 36-37 (2009) [PubMed]
  22. Yamada, S., Sugimoto, H., Kobayashi, M., Ohno, A., Nakamura, H., Shiro, Y. "Structure of PAS-linked histidine kinase and the response regulator complex". Structure 17, 1333-1344 (2009) [PubMed]
  23. Sawai, H., Sugimoto, H., Kato, Y., Asano, Y., Shiro, Y., Aono, S. "X-ray crystal structure of the Michaelis complex of aldoxime dehydratase". J. Biol. Chem. 284, 32089-32096 (2009) [PubMed]
  24. Yaoi, K., Kondo, H., Hiyoshi, A., Noro, N., Sugimoto, H., Tsuda, S., Miyazaki, K. "The crystal structure of a xyloglucan-specific endo-beta-1,4-glucanase from Geotrichum sp. M128 xyloglucanase reveals a key amino acid residue for substrate specificity". FEBS J. 276, 5094-5100 (2009) [PubMed]
  25. Fukumura, E., Sugimoto, H., Misumi, Y., Ogura, T., Shiro, Y. "Cooperative binding of L-trp to human tryptophan 2,3-dioxygenase: resonance Raman spectroscopic analysis". J. Biochem. (Tokyo) 145, 505-515 (2009) [PubMed]
    26.  
  26. Hayashi, K., Sugimoto, H., Shinkyo, R. et al "Structure-based design of a highly active vitamin D hydroxylase from Streptomyces griseolus CYP105A1". Biochemistry 47, 11964-11972 (2008)
  27. Chung, L. W., Li, X., Sugimoto, H., Shiro, Y., Morokuma, K. "Density functional theory study on a missing piece in understanding of heme chemistry: the reaction mechanism for indoleamine 2,3-dioxygenase and tryptophan 2,3-dioxygenase". J. Am. Chem. Soc. 130, 12299-12309 (2008)
  28. Nakashima, H., Uto, Y., Nakata, E. et al "Synthesis and biological activity of 1-methyl-tryptophan-tirapazamine hybrids as hypoxia-targeting indoleamine 2,3-dioxygenase inhibitors". Bioorg. Med. Chem. 16, 8661-8669 (2008)
  29. Nishimiya, Y., Kondo, H., Takamichi, M., Sugimoto, H., Suzuki, M., Miura, A., Tsuda, S. "Crystal structure and mutational analysis of Ca2+-independent type II antifreeze protein from longsnout poacher, Brachyopsis rostratus". J. Mol. Biol. 382, 734-746 (2008)
  30. Sugimoto, H., Shinkyo, R., Hayashi, K. et al "Crystal structure of CYP105A1 (P450SU-1) in complex with 1alpha,25-dihydroxyvitamin D3". Biochemistry 47, 4017-4027 (2008)
    31.  
  31. Harada, K., Makino, M., Sugimoto, H., Hirota, S., Matsuo, T., Shiro, Y., Hisaeda, Y., Hayashi, T. "Structure and ligand binding properties of myoglobins reconstituted with monodepropionated heme: functional role of each heme propionate side chain". Biochemistry 46, 9406-9416 (2007)
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[著書]

  • Sugimoto, H., Takikawa, O., Shiro, Y. "Tryptophan Catabolism by Heme Dioxygenases." In Handbook of Porphylin Science, Kadish K.M., Smith K.M., Guilard R. (eds), Vol. 5, 24, pp 71-122. Singapore: World Scientific (2010)
  • "P450の分子構造" P450の分子生物学 第２版（大村 恒雄, 石村巽, 藤井義明 編）講談社 pp35-45 (2009)
  • "X線結晶構造解析の原理・金属酵素への応用" 酵素利用技術大系（小宮山眞 監修, 秋吉一成 編）エヌ・ティー・エス, p25-28 (2010)

[総説など]

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  • 杉本宏, 新京楽, 林恵子 et al "ビタミンD水酸化活性をもつ放線菌由来CYP105A1の立体構造の解明". ビタミン 82, 497-502 (2008)
  • 杉本宏, 永野真吾, 城宜嗣 "酸素添加酵素の分子メカニズム". 日本結晶学会誌 48, 418-423 (2006)
  • 杉本宏 "セレノメチオニンを用いたタンパク質の発現、精製、結晶化". 構造生物 4, 71-75 (1998)
  • 杉本宏, 田中勲 "マクロファージ遊走阻止因子の構造解析". 構造生物 3(1997)
  • 鈴木守, 杉本宏, 中川敦史, 田中勲 "マクロファージ遊走阻止因子−セレノメチオニンを使ったMAD法による解析例−". 日本結晶学会誌 38, 54-59 (1996)