Centers & Labs

Advanced Center for Computing and Communication (ACCC)

Ryutaro  Himeno(D.Eng.)
Director:
Ryutaro Himeno
(D.Eng.)

ACCC is operating research and technology development and trend survey on computational engineering, computational chemistry and bioinformatics.
These are common subjects entire RIKEN.
In addition, ACCC is thinking and operating with researchers on problems that need to consider computer hardware and software at the same time such as effective computing for huge experimental data.

Research fields

Information science / Interdisciplinary studies / Science and engineering / Chemistry / Engineering / Life science

Keywords

  • HPC
  • Bioengineering, Computational Engineering
  • Bioinformatics
  • Computational Chemistry
  • Database

Selected Publications

  1. Kitamura Kunihiro, Tamura Yunoshin, Ueki Tomokazu, Ogata Koji, Noda Shigeho, Himeno Ryutaro, Chuman Hiroshi.:
    "Binding Free-Energy Calculation Is a Powerful Tool for Drug Optimizaiont: Calculation and Measurement of Binding Free Energy for 7-Azaindole Derivatives to Glycogen Synthase Kinase-3β"
    J. Chem. Inf. Model, Vol. 54, No.6 pp. 1653-1660 (2014)
  2. Sugiyama Kazuyasu, Yasuhiro Kawashima, Noda Shigeho, Ii Hitoshi, Koyama Hiroshi, Takagi Shu, Matsumoto Yoichiro, Himeno Ryutaro.:
    "Massively parallel computing of novel fluid-structure interaction solver on the K computer"
    HPCS 2013, IPSJ-HPCS2013050 (2013)
  3. Furuta Takuya, Ishikawa Kenichi, Fukunishi Nobuhisa, Noda Shigeho, Takagi Shu, Maeyama Takuya, Fukasaku Kazuaki, Himeno Ryutaro.:
    "Implementation of OpenMP and MPI hybrid parallelization to Monte Carlo dose simulation for particle therapy"
    IFMBE Proceedings, 2099--2102 (2013)
  4. Oho Yuko, Shimokawa Kazuro, Kanauchi-Takemoto Satoko, Asami Hirakiyama, Nakamura Sakiko, Tsujimura Yuki, Nishimura Masaomi, Kasukawa Takeya, Masumoto Koh-hei, Nikaido Itoshi, Shigeyoshi Yasufumi, Ueda Hiroki, Song Gang, Gee James, Himeno Ryutaro, Yokota Hideo.:
    "ranscriptome tomography for brain analysis in the web-accessible anatomical space"
    PLOS ONE, 7 Vol. 9 pp. e45373:1--10 (2012)
  5. Abalenkovs Maksims, Costen Fumie, Berenger Jean-Pierre, Himeno Ryutaro, Yokota Hideo, Fujii Masafumi.:
    "Huygens Subgridding for 3D Frequency-Dependent Finite-Difference Time-Domain Method"
    IEEE Transactions on Antennas and Propagation, 60 Vol. 9 pp. 4366--4344 (2012)
  6. Fujisaki Kazuhiro, Yokota Hideo, Furushiro Naomichi, S. Komatani, S. Ohzawa, Y. Sato, D. Matsunaga, Himeno Ryutaro, Higuchi Toshirou, Makinouchi Akitake.:
    "Three-Dimensional Microscopic Elemental Analysis Using an Automated High-Precision Serial Sectioning System"
    Microscopy and Microanalysis, 17(2) pp. 246--251 (2011)
  7. Y. Hirano, J. Kimurak, Y. Nambo, Yokota Hideo, Nakamura Sakiko, Kanauchi-Takemoto Satoko, Himeno Ryutaro, T. Mishima, M. Matsui, Y.-I. Miyake.:
    "Population of Follicles and Luteal Structures during the Oestrous Cycle of Mares Detected by Three-Dimensional Internal Structure Microscopy"
    Anatomia, Histologia, Embryologia, 38(3) pp. 214--218 (2009)
  8. Liang Fuyou, Takagi Shu, Himeno Ryutaro, Liu Hao.:
    "Biomechanical characterization of ventricular-arterial coupling during aging: a multi-scale model study"
    Journal of Biomechanics, 42 pp.692--704, (2009)
  9. Liang Fuyou, Takagi Shu, Himeno Ryutaro, Liu Hao.:
    "Multi-scale modeling of the human cardiovascular system with applications to aortic valvular and arterial stenoses"
    Medical and Biological Engineering and Computing, 47 pp. 743--755 (2009)
  10. Kikugawa Gota, Rossen Apostolov, Kamiya Narutoshi, Taiji Makoto, Himeno Ryutaro, Nakamura haruki, Yonezawa Yasushige.:
    "Application of MDGRAPE-3, a special purpose board for molecular dynamics simulations, to periodic biomolecular systems"
    Journal of Computational Chemistry, 30 Vol. 1 pp.110--118, (2009)

Organization

Contact information

2-1 Hirosawa
Wako, Saitama
351-0198 Japan
Tel: +81-(0)48-467-9323
Fax: +81-(0)48-462-4634

Email: accc-info [at] riken.jp

Related links