Centers & Labs

RIKEN Center for Integrative Medical Sciences

Laboratory for Disease Systems Modeling

Group Director: Hiroaki Kitano (Ph.D.)
Hiroaki  Kitano(Ph.D.)

Disease Systems Modeling Group is responsible for systems biology research and software platform development within Integrative Medical Sciences Center of RIKEN. The group will investigate systems-level principles behind diseases, develop multi-layer physiological models and detailed cellular and molecular interaction models that will be verified through experiments. These basic studies will be quickly applied for drug discovery and personalized medicine. In addition, a series of research will be carried out for novel computational analysis of models as well as efficient model development. Such approaches include, but limited to, text-mining, qualitative reasoning, machine learning, and other AI-related technique.

The group maintains "wet" laboratory capabilities including gTOW-6000 budding yeast quantitative over-expression assay system and a range of mammalian cell-based experimental facilities. Computational models can be verified through experiments. Furthermore, we are planning to start a novel approach to cellular-reprograming targeting iPS cell, direct reprograming, and potential other approaches.

Our goal is to accomplished scientific breakthrough and technology innovations and quickly turn them into practice and business in the real world, particularly in the field of drug discovery, personalized medicine, and a broad context of regenerative medicine leveraging our strength in systems-oriented approach.

Main Research Field

Biological Sciences

Related Research Fields

Informatics / Complex systems / Mathematical and physical sciences / Biology / Medicine, dentistry, and pharmacy

Research Subjects

  • Systems biology of auto-immune diseases and atopic dermatitis
  • Systems drug discovery and related software platform development
  • Systems biology of cellular reprograming

Selected Publications

  1. Kitano, H.:
    “Systems Biology: A Brief Overview”
    Science 295, 1662-1664 (2002).
  2. Kitano, H.:
    “Computational systems biology”
    Nature 420, 206-210, (2002).
  3. Kitano, H.:
    “Biological Robustness”
    Nature Reviews Genetics 5, 826-837, (2004).
  4. Kitano, H.:
    “Cancer as a robust system: implications for anticancer therapy”
    Nature Reviews Cancer 4, 227-235, (2004).
  5. Kitano, H., Funahashi, A., Matsuoka, Y., Oda, K.:
    “Using process diagrams for the graphical representation of biological networks”
    Nature Biotechnology 23, 961-966, (2005)
  6. Moriya, H., Yoshida, Y., Kitano, H.:
    “In Vivo Robustness Analysis of Cell Division Cycle Genes in Saccharomyces cerevisiae”
    PLoS Genetics 2, (2006).
  7. Kitano, H.:
    “A robustness-based approach to systems-oriented drug design”
    Nature Reviews Drug Discovery, 6, 202-210, (2007).
  8. Le Novere, N., Hucka, M., Mi, H., Moodie, S., Schreiber, F., Sorokin, A., Demir, E., Wegner, K, Aladjem, I.M., Wimalaratne, S. M., Bergman, F. T., Gauges, R., Ghazal, P., Kawaji, H., Li, L., Matsuoka, Y., Villéger, A., Boyd, S. E., Calzone, L., Courtot, M., Dogrusoz, U., Freeman, T. C., Funahashi, A., Ghosh, S., Jouraku, A., Kim, S., Kolpakov, F., Luna, A., Sahle, S., Schmidt, E., Watterson, S., Wu, G., Goryanin, I., Kell, D. B., Sander, C., Sauro, H., Snoep, J. L., Kohn, K., Kitano, H.:
    “The Systems Biology Graphical Notation”
    Nature Biotechnology 27, 735-741, (2009)
  9. Kitano, H., Ghosh, S., Matsuoka, Y.:
    “Social engineering for virtual 'big science' in systems biology”
    Nature Chemical Biology 7, 323-326, (2011).
  10. Ghosh, S., Matsuoka, Y., Asai, Y., Hsin, K-Y., Kitano, H.:
    “Software for systems biology: from tools to integrated platforms”
    Nature Reviews Genetics 12, 821-832, (2011).

Lab Members

Principal Investigator

Hiroaki Kitano
Group Director

Core Members

Jun Seita
Senior Scientist
Archana Bajpai
Postdoctoral Researcher
Eiryo Kawakami
Postdoctoral Researcher
Reiko Kuwahara
Technical Staff I
Takashi Ishii
Technical Staff I
Koichi Ashizaki
Technical Staff I
Yuka Masaike
Technical Staff I

Contact information

1-7-22 Suehiro-cho, Tsurumi-ku,
Yokohama City, Kanagawa,
230-0045, Japan

Email: hiroaki.kitano [at] riken.jp

Related links

Further information