RIKEN Publication
Published Research Papers of RIKEN Researchersupdate: Sun, 17 Jan 2010 19:35:18 -0500
total number of papers: 94- Synthesis of hydroxylated oligoarene-type phosphines by a repetitive two-step method
Ishikawa, S; Manabe, K
TETRAHEDRON 66 (1): 297-303 JAN 2 2010

- Fluctuation of charge density wave of TTF-TCNQ under extreme pressure
Murata, K; Weng, YF; Seno, Y; et al.
SYNTHETIC METALS 159 (21-22): 2397-2398 Sp. Iss. SI NOV 2009

- Temperature-insensitive reaction in the mammalian circadian clock
Nakajima, M; Ukai, H; Isojima, Y; et al.
SLEEP AND BIOLOGICAL RHYTHMS 7 (4): 243-251 OCT 2009

- Frequency-agile terahertz-wave parametric oscillator in a ring-cavity configuration
Minamide, H; Ikari, T; Ito, H
REVIEW OF SCIENTIFIC INSTRUMENTS 80 (12): Art. No. 123104 DEC 2009

- Antiproton, positron, and electron imaging with a microchannel plate/phosphor detector
Andresen, GB; Bertsche, W; Bowe, PD; et al.
REVIEW OF SCIENTIFIC INSTRUMENTS 80 (12): Art. No. 123701 DEC 2009

- Study of bubble distributions by high-energy protons in bubble detectors and its hints in neutron detection at higher altitude and in space
Guo, SL; Doke, T; Zhang, DH; et al.
RADIATION MEASUREMENTS 44 (9-10): 885-888 Sp. Iss. SI OCT-NOV 2009

- Planarian Hedgehog/Patched establishes anterior-posterior polarity by regulating Wnt signaling
Yazawa, S; Umesono, Y; Hayashi, T; et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 106 (52): 22329-22334 DEC 29 2009

- An Excellent Monitoring System for Surface Ubiquitination-Induced Internalization in Mammals
Goto, E; Mito-Yoshida, M; Uematsu, M; et al.
PLOS ONE 3 (1): Art. No. e1490 JAN 30 2008

- Social Modulation during Songbird Courtship Potentiates Midbrain Dopaminergic Neurons
Huang, YC; Hessler, NA
PLOS ONE 3 (10): Art. No. e3281 OCT 1 2008

- Distribution and Effects of Nonsense Polymorphisms in Human Genes
Yamaguchi-Kabata, Y; Shimada, MK; Hayakawa, Y; et al.
PLOS ONE 3 (10): Art. No. e3393 OCT 14 2008

- GSK-3 beta Is Required for Memory Reconsolidation in Adult Brain
Kimura, T; Yamashita, S; Nakao, S; et al.
PLOS ONE 3 (10): Art. No. e3540 OCT 28 2008

- Identification of CD4(-)CD8(-) Double-Negative Natural Killer T Cell Precursors in the Thymus
Dashtsoodol, N; Watarai, H; Sakata, S; et al.
PLOS ONE 3 (11): Art. No. e3688 NOV 10 2008

- Systematic NMR Analysis of Stable Isotope Labeled Metabolite Mixtures in Plant and Animal Systems: Coarse Grained Views of Metabolic Pathways
Chikayama, E; Suto, M; Nishihara, T; et al.
PLOS ONE 3 (11): Art. No. e3805 NOV 25 2008

- The Zinc Transporter SLC39A13/ZIP13 Is Required for Connective Tissue Development; Its Involvement in BMP/TGF-beta Signaling Pathways
Fukada, T; Civic, N; Furuichi, T; et al.
PLOS ONE 3 (11): Art. No. e3642 NOV 5 2008

- Prdm Proto-Oncogene Transcription Factor Family Expression and Interaction with the Notch-Hes Pathway in Mouse Neurogenesis
Kinameri, E; Inoue, T; Aruga, J; et al.
PLOS ONE 3 (12): Art. No. e3859 DEC 3 2008

- Establishment of Mouse Embryonic Stem Cell-Derived Erythroid Progenitor Cell Lines Able to Produce Functional Red Blood Cells
Hiroyama, T; Miharada, K; Sudo, K; et al.
PLOS ONE 3 (2): Art. No. e1544 FEB 6 2008

- Topological Analysis of MAPK Cascade for Kinetic ErbB Signaling
Nakakuki, T; Yumoto, N; Naka, T; et al.
PLOS ONE 3 (3): Art. No. e1782 MAR 12 2008

- Integrative Genome-Wide Expression Analysis Bears Evidence of Estrogen Receptor-Independent Transcription in Heregulin-Stimulated MCF-7 Cells
Nagashima, T; Suzuki, T; Kondo, S; et al.
PLOS ONE 3 (3): Art. No. e1803 MAR 19 2008

- Tool-Use Training in a Species of Rodent: The Emergence of an Optimal Motor Strategy and Functional Understanding
Okanoya, K; Tokimoto, N; Kumazawa, N; et al.
PLOS ONE 3 (3): Art. No. e1860 MAR 26 2008

- A Marked Effect of Electroconvulsive Stimulation on Behavioral Aberration of Mice with Neuron-Specific Mitochondrial DNA Defects
Kasahara, T; Kubota, M; Miyauchi, T; et al.
PLOS ONE 3 (3): Art. No. e1877 MAR 26 2008

- Genome-Wide Analysis of Abnormal H3K9 Acetylation in Cloned Mice
Suzuki, T; Kondo, S; Wakayama, T; et al.
PLOS ONE 3 (4): Art. No. e1905 APR 9 2008

- Engineering of a Genetically Encodable Fluorescent Voltage Sensor Exploiting Fast Ci-VSP Voltage-Sensing Movements
Lundby, A; Mutoh, H; Dimitrov, D; et al.
PLOS ONE 3 (6): Art. No. e2514 JUN 25 2008

- Cortical Layer 1 and Layer 2/3 Astrocytes Exhibit Distinct Calcium Dynamics In Vivo
Takata, N; Hirase, H
PLOS ONE 3 (6): Art. No. e2525 JUN 25 2008

- A Resource for Transcriptomic Analysis in the Mouse Brain
Plessy, C; Fagiolini, M; Wagatsuma, A; et al.
PLOS ONE 3 (8): Art. No. e3012 AUG 20 2008

- GABA(A) Receptor-Mediated Acceleration of Aging-Associated Memory Decline in APP/PS1 Mice and Its Pharmacological Treatment by Picrotoxin
Yoshiike, Y; Kimura, T; Yamashita, S; et al.
PLOS ONE 3 (8): Art. No. e3029 AUG 21 2008

- Activation-Induced Cytidine Deaminase Deficiency Causes Organ-Specific Autoimmune Disease
Hase, K; Takahashi, D; Ebisawa, M; et al.
PLOS ONE 3 (8): Art. No. e3033 AUG 21 2008

- Amyloid Oligomer Conformation in a Group of Natively Folded Proteins
Yoshiike, Y; Minai, R; Matsuo, Y; et al.
PLOS ONE 3 (9): Art. No. e3235 SEP 18 2008

- Assessment of Metabolome Annotation Quality: A Method for Evaluating the False Discovery Rate of Elemental Composition Searches
Matsuda, F; Shinbo, Y; Oikawa, A; et al.
PLOS ONE 4 (10): Art. No. e7490 OCT 16 2009

- Spectrally-Resolved Response Properties of the Three Most Advanced FRET Based Fluorescent Protein Voltage Probes
Mutoh, H; Perron, A; Dimitrov, D; et al.
PLOS ONE 4 (2): Art. No. e4555 FEB 23 2009

- A High-Speed Congenic Strategy Using First-Wave Male Germ Cells
Ogonuki, N; Inoue, K; Hirose, M; et al.
PLOS ONE 4 (3): Art. No. e4943 MAR 31 2009

- A Postnatal Critical Period for Orientation Plasticity in the Cat Visual Cortex
Tanaka, S; Tani, T; Ribot, J; et al.
PLOS ONE 4 (4): Art. No. e5380 APR 29 2009

- Beneficial Effects of Estrogen in a Mouse Model of Cerebrovascular Insufficiency
Kitamura, N; Araya, R; Kudoh, M; et al.
PLOS ONE 4 (4): Art. No. e5159 APR 9 2009

- Protein Conformational Changes in the Bacteriorhodopsin Photocycle: Comparison of Findings from Electron and X-Ray Crystallographic Analyses
Hirai, T; Subramaniam, S
PLOS ONE 4 (6): Art. No. e5769 JUN 2 2009

- Transcription-Independent Heritability of Induced Histone Modifications in the Mouse Preimplantation Embryo
VerMilyea, MD; O'Neill, LP; Turner, BM
PLOS ONE 4 (6): Art. No. e6086 JUN 30 2009

- MiR-107 and MiR-185 Can Induce Cell Cycle Arrest in Human Non Small Cell Lung Cancer Cell Lines
Takahashi, Y; Forrest, ARR; Maeno, E; et al.
PLOS ONE 4 (8): Art. No. e6677 AUG 18 2009

- Detrimental Effects of Microgravity on Mouse Preimplantation Development In Vitro
Wakayama, S; Kawahara, Y; Li, C; et al.
PLOS ONE 4 (8): Art. No. e6753 AUG 25 2009

- Glioblastoma Formation from Cell Population Depleted of Prominin1-Expressing Cells
Nishide, K; Nakatani, Y; Kiyonari, H; et al.
PLOS ONE 4 (8): Art. No. e6869 AUG 31 2009

- A Screen for Spore Wall Permeability Mutants Identifies a Secreted Protease Required for Proper Spore Wall Assembly
Suda, Y; Rodriguez, RK; Coluccio, AE; et al.
PLOS ONE 4 (9): Art. No. e7184 SEP 25 2009

- RNAi Screening in Drosophila Cells Identifies New Modifiers of Mutant Huntingtin Aggregation
Doumanis, J; Wada, K; Kino, Y; et al.
PLOS ONE 4 (9): Art. No. e7275 SEP 30 2009

- Members of the LBD Family of Transcription Factors Repress Anthocyanin Synthesis and Affect Additional Nitrogen Responses in Arabidopsis
Rubin, G; Tohge, T; Matsuda, F; et al.
PLANT CELL 21 (11): 3567-3584 NOV 2009

- Halo Structure of the Island of Inversion Nucleus Ne-31
Nakamura, T; Kobayashi, N; Kondo, Y; et al.
PHYSICAL REVIEW LETTERS 103 (26): Art. No. 262501 DEC 31 2009

- Real-Time Quantum Dynamics of Interacting Electrons: Self-Organized Nanoscale Structure in a Spin-Electron Coupled System
Koshibae, W; Furukawa, N; Nagaosa, N
PHYSICAL REVIEW LETTERS 103 (26): Art. No. 266402 DEC 31 2009

- Novel Radiation-Induced Magnetoresistance Oscillations in a Nondegenerate Two-Dimensional Electron System on Liquid Helium
Konstantinov, D; Kono, K
PHYSICAL REVIEW LETTERS 103 (26): Art. No. 266808 DEC 31 2009

- Optical Probe for Anomalous Hall Resonance in Ferromagnets with Spin Chirality
Iguchi, S; Kumakura, S; Onose, Y; et al.
PHYSICAL REVIEW LETTERS 103 (26): Art. No. 267206 DEC 31 2009

- Gluon-propagator functional form in the Landau gauge in SU(3) lattice QCD: Yukawa-type gluon propagator and anomalous gluon spectral function
Iritani, T; Suganuma, H; Iida, H
PHYSICAL REVIEW D 80 (11): Art. No. 114505 DEC 2009

- Fermi large area telescope observations of the cosmic-ray induced gamma-ray emission of the Earth's atmosphere
Abdo, AA; Ackermann, M; Ajello, M; et al.
PHYSICAL REVIEW D 80 (12): Art. No. 122004 DEC 2009

- Color magnetic flux tubes in dense QCD
Eto, M; Nitta, M
PHYSICAL REVIEW D 80 (12): Art. No. 125007 DEC 2009

- Effective world-sheet theory of color magnetic flux tubes in dense QCD
Eto, M; Nakano, E; Nitta, M
PHYSICAL REVIEW D 80 (12): Art. No. 125011 DEC 2009

- Optimal pair density functional for the description of nuclei with large neutron excess
Yamagami, M; Shimizu, YR; Nakatsukasa, T
PHYSICAL REVIEW C 80 (6): Art. No. 064301 DEC 2009

- New effective interaction for f(5)pg(9)-shell nuclei
Honma, M; Otsuka, T; Mizusaki, T; et al.
PHYSICAL REVIEW C 80 (6): Art. No. 064323 DEC 2009

- Noise-induced quantum coherence and persistent Rabi oscillations in a Josephson flux qubit
Omelyanchouk, AN; Savel'ev, S; Zagoskin, AM; et al.
PHYSICAL REVIEW B 80 (21): Art. No. 212503 DEC 2009

- Cooling a magnetic resonance force microscope via the dynamical back action of nuclear spins
Greenberg, YS; Il'ichev, E; Nori, F
PHYSICAL REVIEW B 80 (21): Art. No. 214423 DEC 2009

- Electric-dipole-active magnetic resonance in the conical-spin magnet Ba2Mg2Fe12O22
Kida, N; Okuyama, D; Ishiwata, S; et al.
PHYSICAL REVIEW B 80 (22): Art. No. 220406 DEC 2009

- Site-specific valence fluctuations in Eu3Pd20Ge6 studied via Moumlssbauer and x-ray absorption spectroscopies
Tsutsui, S; Mizumaki, M; Kobayashi, Y; et al.
PHYSICAL REVIEW B 80 (23): Art. No. 235115 DEC 2009

- Detecting Bose-Einstein condensation of exciton-polaritons via electron transport
Chen, YN; Lambert, N; Nori, F
PHYSICAL REVIEW B 80 (23): Art. No. 235335 DEC 2009

- Fermi surface of Co(0001) and initial-state linewidths determined by soft x-ray angle-resolved photoemission spectroscopy
Mulazzi, M; Miyawaki, J; Chainani, A; et al.
PHYSICAL REVIEW B 80 (24): Art. No. 241106 DEC 2009

- Bell's experiment with intra- and inter-pair entanglement: Single-particle mode entanglement as a case study
Ashhab, S; Maruyama, K; Brukner, C; et al.
PHYSICAL REVIEW A 80 (6): Art. No. 062106 DEC 2009

- Quantum Zeno switch for single-photon coherent transport
Zhou, L; Yang, S; Liu, YX; et al.
PHYSICAL REVIEW A 80 (6): Art. No. 062109 DEC 2009

- Experimental and theoretical investigation of a multicolor filament
Fuji, T; Suzuki, T; Serebryannikov, EE; et al.
PHYSICAL REVIEW A 80 (6): Art. No. 063822 DEC 2009

- Effective Hamiltonian approach to the Kerr nonlinearity in an optomechanical system
Gong, ZR; Ian, H; Liu, YX; et al.
PHYSICAL REVIEW A 80 (6): Art. No. 065801 DEC 2009

- Ultra-fast switching of light by absorption saturation in vacuum ultra-violet region
Yoneda, H; Inubushi, Y; Tanaka, T; et al.
OPTICS EXPRESS 17 (26): 23443-23448 DEC 21 2009

- Pulse energy of the extreme-ultraviolet free-electron laser at SPring-8 determined using a cryogenic radiometer
Kato, M; Saito, N; Tanaka, T; et al.
NUCLEAR INSTRUMENTS&METHODS IN PHYSICS RESEARCH SECTION A-ACCELERATORS SPECTROMETERS DETECTORS AND ASSOCIATED EQUIPMENT 612 (1): 209-211 DEC 21 2009

- Age-dependent Preferential Dense-Core Vesicle Exocytosis in Neuroendocrine Cells Revealed by Newly Developed Monomeric Fluorescent Timer Protein
Tsuboi, T; Kitaguchi, T; Karasawa, S; et al.
MOLECULAR BIOLOGY OF THE CELL 21 (1): 87-94 JAN 1 2010

- Correlation of Structure Changes In the Water-Induced Phase Transitions of Poly(ethylenimine) Viewed from Molecular, Crystal, and Higher-Order Levels As Studied by Simultaneous WAXD/SAXS/Raman Measurements
Hashida, T; Tashiro, K; Ito, K; et al.
MACROMOLECULES 43 (1): 402-408 JAN 12 2010

- Transport Properties of Two-dimensional Snowballs Below the Surface of He-4-II Under Rotation
Takahashi, D; Ikegami, H; Kono, K
JOURNAL OF LOW TEMPERATURE PHYSICS 158 (3-4): 391-396 FEB 2009

- NMR Studies of Quantum Rotors Confined in Zeolite
Saitoh, M; Ikegami, H; Kono, K
JOURNAL OF LOW TEMPERATURE PHYSICS 158 (3-4): 509-514 FEB 2009

- Layer-by-layer growth and magnetic properties of Y3Fe5O12 thin films on Gd3Ga5O12
Krockenberger, Y; Yun, KS; Hatano, T; et al.
JOURNAL OF APPLIED PHYSICS 106 (12): Art. No. 123911 DEC 15 2009

- NEW GAUGE INVARIANT FORMULATION OF THE CHERN-SIMONS GAUGE THEORY: CLASSICAL AND QUANTAL ANALYSIS
Park, MI; Park, YJ
INTERNATIONAL JOURNAL OF MODERN PHYSICS A 24 (31): 5933-5975 DEC 20 2009

- Heat shock proteins in antigen trafficking - Implications on antigen presentation to T cells
Udono, H; Ichiyanagi, T; Mizukami, S; et al.
INTERNATIONAL JOURNAL OF HYPERTHERMIA 25 (8): 617-625 Sp. Iss. SI 2009

- Performance Analysis of Complex CDMA Using Complex Chaotic Spreading Sequence with Constant Power
Takahashi, R; Umeno, K
IEICE TRANSACTIONS ON FUNDAMENTALS OF ELECTRONICS COMMUNICATIONS AND COMPUTER SCIENCES E92A (12): 3394-3397 DEC 2009

- Structural basis for chiral substrate recognition by two 2,3-butanediol dehydrogenases
Otagiri, M; Ui, S; Takusagawa, Y; et al.
FEBS LETTERS 584 (1): 219-223 JAN 4 2010

- Neural correlates of odor learning in the honeybee antennal lobe
Denker, M; Finke, R; Schaupp, F; et al.
EUROPEAN JOURNAL OF NEUROSCIENCE 31 (1): 119-133 JAN 2010

- Coherent Water-Window X-Ray Generation by Phase-Matched High Harmonies in Neutral Media
Takahashi, EJ; Midorikawa, K
X-RAY LASERS 2008, PROCEEDINGS 130: 299-306 2009

- Nuclear Spin Maser at Highly Stabilized Low Magnetic Field and Search for Atomic EDM
Yoshimi, A; Asahi, K; Inoue, T; et al.
SPIN PHYSICS 1149: 249-252 2009

- Determination of Delta g from Inclusive pi(0) Measurement at RHIC-PHENIX
Nakano, K
SPIN PHYSICS 1149: 339-342 2009

- Theoretical Overview on Recent Developments in Transverse Spin Physics
Yuan, F
SPIN PHYSICS 1149: 403-408 2009

- Recent Results and Future Prospects for the PHENIX Spin Program
Boyle, K
SPIN PHYSICS 1149: 558-563 2009

- Measurement of Drell-Yan Process with Polarized Proton Beams at J-PARC
Goto, Y
SPIN PHYSICS 1149: 923-926 2009

- Spin Physics Capability with Silicon Vertex Tracker for PHENIX
Kurosawa, M
SPIN PHYSICS 1149: 941-944 2009

- Superlattice Photocathode with High Brightness and Long NEA-Surface Lifetime
Nishitani, T; Tabuchi, M; Takeda, Y; et al.
SPIN PHYSICS 1149: 1047-1051 2009

- JEM-EUSO mission on the ISS with the aim of performing particle astronomy
Inoue, N; Miyazawa, K; Kawasaki, Y
NUCLEAR PHYSICS B-PROCEEDINGS SUPPLEMENTS 196: 135-140 DEC 2009

- The E1 Mechanism in Photo-Induced beta-Elimination Reactions for Green-to-Red Conversion of Fluorescent Proteins
Tsutsui, H; Shimizu, H; Mizuno, H; et al.
CHEMISTRY&BIOLOGY 16 (11): 1140-1147 NOV 25 2009

- HUMAN FAMSD-BASE: High Quality Protein Structure Model Database for the Human Genome Using the FAMSD Homology Modeling Method
Kanou, K; Hirata, T; Iwadate, M; et al.
CHEMICAL&PHARMACEUTICAL BULLETIN 58 (1): 66-75 JAN 2010

- Identification of Binding Proteins of Fusarielin A as Actin and Tubulin
Noguchi-Yachide, T; Dodo, K; Aoyama, H; et al.
CHEMICAL&PHARMACEUTICAL BULLETIN 58 (1): 129-134 JAN 2010

- Threonine at position 306 of the KAT1 potassium channel is essential for channel activity and is a target site for ABA-activated SnRK2/OST1/SnRK2.6 protein kinase
Sato, A; Sato, Y; Fukao, Y; et al.
BIOCHEMICAL JOURNAL 424: 439-448 Part 3 DEC 15 2009

- Fermi Large Area Telescope Measurements of the Diffuse Gamma-Ray Emission at Intermediate Galactic Latitudes
Abdo, AA; Ackermann, M; Ajello, M; et al.
PHYSICAL REVIEW LETTERS 103 (25): Art. No. 251101 DEC 18 2009

- Determining X-Ray Nonlinear Susceptibility of Diamond by the Optical Fano Effect
Tamasaku, K; Sawada, K; Ishikawa, T
PHYSICAL REVIEW LETTERS 103 (25): Art. No. 254801 DEC 18 2009

- A multiplex PCR assay for molecular sexing of the naked mole-rat (Heterocephalus glaber)
Katsushima, K; Nishida, C; Yosida, S; et al.
MOLECULAR ECOLOGY RESOURCES 10 (1): 222-224 JAN 2010

- Acyclic retinoid inhibits angiogenesis by suppressing the MAPK pathway
Komi, Y; Sogabe, Y; Ishibashi, N; et al.
LABORATORY INVESTIGATION 90 (1): 52-60 JAN 2010

- IDENTIFICATION OF THE MINUS MATING-TYPE SPECIFIC GENE MTD1 FROM GONIUM PECTORALE (VOLVOCALES, CHLOROPHYTA)1
Hamaji, T; Ferris, PJ; Nishii, I; et al.
JOURNAL OF PHYCOLOGY 45 (6): 1310-1314 DEC 2009

- One-photon and two-photon excited fluorescence microscopies based on polarization-control: Applications to tip-enhanced microscopy
Hayazawa, N; Furusawa, K; Taguchi, A; et al.
JOURNAL OF APPLIED PHYSICS 106 (11): Art. No. 113103 DEC 1 2009

- Integrated omics approaches in plant systems biology
Fukushima, A; Kusano, M; Redestig, H; et al.
CURRENT OPINION IN CHEMICAL BIOLOGY 13 (5-6): 532-538 DEC 2009

- Chemical approaches toward understanding glycan-mediated protein quality control
Takeda, Y; Totani, K; Matsuo, I; et al.
CURRENT OPINION IN CHEMICAL BIOLOGY 13 (5-6): 582-591 DEC 2009

- NGSView: an extensible open source editor for next-generation sequencing data
Arner, E; Hayashizaki, Y; Daub, CO
BIOINFORMATICS 26 (1): 125-126 JAN 1 2010

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