RIKEN Publication
Published Research Papers of RIKEN Researchersupdate: Sun, 18 Oct 2009 21:04:45 -0400
total number of papers: 87- Quantum Simulators
Buluta, I; Nori, F
SCIENCE 326 (5949): 108-111 OCT 2 2009

- Vacuum-compatible pulse selector for free-electron laser
Kudo, T; Hirono, T; Nagasono, M; et al.
REVIEW OF SCIENTIFIC INSTRUMENTS 80 (9): Art. No. 093301 SEP 2009

- Alteration of oligomeric state and domain architecture is essential for functional transformation between transferase and hydrolase with the same scaffold
Koike, R; Kidera, A; Ota, M
PROTEIN SCIENCE 18 (10): 2060-2066 OCT 2009

- Production of functional bacteriorhodopsin by an Escherichia coli cell-free protein synthesis system supplemented with steroid detergent and lipid
Shimono, K; Goto, M; Kikukawa, T; et al.
PROTEIN SCIENCE 18 (10): 2160-2171 OCT 2009

- Function of IRE1 alpha in the placenta is essential for placental development and embryonic viability
Iwawaki, T; Akai, R; Yamanaka, S; et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 106 (39): 16657-16662 SEP 29 2009

- CHOTTO1, a Putative Double APETALA2 Repeat Transcription Factor, Is Involved in Abscisic Acid-Mediated Repression of Gibberellin Biosynthesis during Seed Germination in Arabidopsis
Yano, R; Kanno, Y; Jikumaru, Y; et al.
PLANT PHYSIOLOGY 151 (2): 641-654 OCT 2009

- SUMO E3 Ligase HIGH PLOIDY2 Regulates Endocycle Onset and Meristem Maintenance in Arabidopsis
Ishida, T; Fujiwara, S; Miura, K; et al.
PLANT CELL 21 (8): 2284-2297 AUG 2009

- The Trihelix Transcription Factor GTL1 Regulates Ploidy-Dependent Cell Growth in the Arabidopsis Trichome
Breuer, C; Kawamura, A; Ichikawa, T; et al.
PLANT CELL 21 (8): 2307-2322 AUG 2009

- Arabidopsis Bile Acid:Sodium symporter Family Protein 5 is Involved in Methionine-Derived Glucosinolate Biosynthesis
Sawada, Y; Toyooka, K; Kuwahara, A; et al.
PLANT AND CELL PHYSIOLOGY 50 (9): 1579-1586 SEP 2009

- Involvement of C-22-Hydroxylated Brassinosteroids in Auxin-Induced Lamina Joint Bending in Rice
Nakamura, A; Fujioka, S; Takatsuto, S; et al.
PLANT AND CELL PHYSIOLOGY 50 (9): 1627-1635 SEP 2009

- Transcriptome Analyses Revealed Diverse Expression Changes in ago1 and hyl1 Arabidopsis Mutants
Kurihara, Y; Kaminuma, E; Matsui, A; et al.
PLANT AND CELL PHYSIOLOGY 50 (9): 1715-1720 SEP 2009

- Laser pulse guiding and electron acceleration in the ablative capillary discharge plasma
Kameshima, T; Kotaki, H; Kando, M; et al.
PHYSICS OF PLASMAS 16 (9): Art. No. 093101 SEP 2009

- Charged Kaon Interferometric Probes of Space-Time Evolution in Au plus Au Collisions at s(NN)=200 GeV
Afanasiev, S; Aidala, C; Ajitanand, NN; et al.
PHYSICAL REVIEW LETTERS 103 (14): Art. No. 142301 OCT 2 2009

- Anomalous Metallic State in the Vicinity of Metal to Valence-Bond Solid Insulator Transition in LiVS2
Katayama, N; Uchida, M; Hashizume, D; et al.
PHYSICAL REVIEW LETTERS 103 (14): Art. No. 146405 OCT 2 2009

- Dynamical Casimir Effect in a Superconducting Coplanar Waveguide
Johansson, JR; Johansson, G; Wilson, CM; et al.
PHYSICAL REVIEW LETTERS 103 (14): Art. No. 147003 OCT 2 2009

- Electric-Field Switching of a Magnetic Propagation Vector in a Helimagnet
Murakawa, H; Onose, Y; Tokura, Y
PHYSICAL REVIEW LETTERS 103 (14): Art. No. 147201 OCT 2 2009

- Li Diffusion in LixCoO2 Probed by Muon-Spin Spectroscopy
Sugiyama, J; Mukai, K; Ikedo, Y; et al.
PHYSICAL REVIEW LETTERS 103 (14): Art. No. 147601 OCT 2 2009

- Collective-phase description of coupled oscillators with general network structure
Kori, H; Kawamura, Y; Nakao, H; et al.
PHYSICAL REVIEW E 80 (3): Art. No. 036207 Part 2 SEP 2009

- Lattice study of two-dimensional N = (2,2) super Yang-Mills theory at large N
Hanada, M; Kanamori, I
PHYSICAL REVIEW D 80 (6): Art. No. 065014 SEP 2009

- beta decay of the 21/2(+) isomer in Mo-93 and level structure of Nb-93
Hori, T; Masue, T; Odahara, A; et al.
PHYSICAL REVIEW C 80 (3): Art. No. 034306 SEP 2009

- High-spin structure of Cl-37, intruder excitations, and the sd-fp shell gap
Ionescu-Bujor, M; Iordachescu, A; Lenzi, SM; et al.
PHYSICAL REVIEW C 80 (3): Art. No. 034314 SEP 2009

- Half-life estimation of the first excited state of Th-229 by using alpha-particle spectrometry
Kikunaga, H; Kasamatsu, Y; Haba, H; et al.
PHYSICAL REVIEW C 80 (3): Art. No. 034315 SEP 2009

- Production of very neutron-rich nuclei with a Ge-76 beam
Tarasov, OB; Portillo, M; Amthor, AM; et al.
PHYSICAL REVIEW C 80 (3): Art. No. 034609 SEP 2009

- g factors of N-17 and N-18 remeasured
De Rydt, M; Balabanski, DL; Daugas, JM; et al.
PHYSICAL REVIEW C 80 (3): Art. No. 037306 SEP 2009

- Large and ultrafast photoinduced reflectivity change in the charge separated phase of Et2Me2Sb[Pd(1,3-dithiol-2-thione-4,5-dithiolate)(2)](2)
Ishikawa, T; Fukazawa, N; Matsubara, Y; et al.
PHYSICAL REVIEW B 80 (11): Art. No. 115108 SEP 2009

- Electronic structure of YMn2 and Y0.96Lu0.04Mn2 studied by x-ray emission spectroscopy
Yamaoka, H; Tsujii, N; Jarrige, I; et al.
PHYSICAL REVIEW B 80 (11): Art. No. 115110 SEP 2009

- Development of the heavy-fermion state in Ce2IrIn8 and the effects of Ce dilution in (Ce1-xLax)(2)IrIn8
Ohishi, K; Heffner, RH; Ito, TU; et al.
PHYSICAL REVIEW B 80 (12): Art. No. 125104 SEP 2009

- Electronic and magnetic properties of RMnO3/AMnO(3) heterostructures
Yu, R; Yunoki, S; Dong, SA; et al.
PHYSICAL REVIEW B 80 (12): Art. No. 125115 SEP 2009

- Drastic change of the Casimir force at the metal-insulator transition
Galkina, EG; Ivanov, BA; Savel'ev, S; et al.
PHYSICAL REVIEW B 80 (12): Art. No. 125119 SEP 2009

- Anisotropic polarization pi-molecular skeleton coupled dynamics in proton-displacive organic ferroelectrics
Fujioka, J; Horiuchi, S; Kida, N; et al.
PHYSICAL REVIEW B 80 (12): Art. No. 125134 SEP 2009

- Band dispersion near the Fermi level for VO2 thin films grown on TiO2 (001) substrates
Saeki, K; Wakita, T; Muraoka, Y; et al.
PHYSICAL REVIEW B 80 (12): Art. No. 125406 SEP 2009

- Potential barrier modification and interface states formation in metal-oxide-metal tunnel junctions
Jung, H; Kim, Y; Jung, K; et al.
PHYSICAL REVIEW B 80 (12): Art. No. 125413 SEP 2009

- Mn 2p core-level spectra of La1-xBaxMnO3 thin films using hard x-ray photoelectron spectroscopy: Relation between electronic and magnetic states
Ueda, S; Tanaka, H; Ikenaga, E; et al.
PHYSICAL REVIEW B 80 (9): Art. No. 092402 SEP 2009

- Phase competition and long-period charge/orbital ordering in the overdoped distorted perovskite manganites R1-xSrxMnO3
Tomioka, Y; Yu, XZ; Ito, T; et al.
PHYSICAL REVIEW B 80 (9): Art. No. 094406 SEP 2009

- Shape and wobbling wave excitations in Josephson junctions: Exact solutions of the (2+1)-dimensional sine-Gordon model
Gulevich, DR; Kusmartsev, FV; Savel'ev, S; et al.
PHYSICAL REVIEW B 80 (9): Art. No. 094509 SEP 2009

- Ultrastrong coupling regime of cavity QED with phase-biased flux qubits
Bourassa, J; Gambetta, JM; Abdumalikov, AA; et al.
PHYSICAL REVIEW A 80 (3): Art. No. 032109 SEP 2009

- Resonance states of unnatural parity in positronic atoms
Shimamura, I; Wakimoto, H; Igarashi, A
PHYSICAL REVIEW A 80 (3): Art. No. 032708 SEP 2009

- Identification of valence electronic states of aqueous acetic acid in acid-base equilibrium using site-selective X-ray emission spectroscopy
Horikawa, Y; Tokushima, T; Harada, Y; et al.
PHYSICAL CHEMISTRY CHEMICAL PHYSICS 11 (39): 8676-8679 2009

- PPARG Genotype Accounts for Part of Individual Variation in Body Weight Reduction in Response to Calorie Restriction
Matsuo, T; Nakata, Y; Katayama, Y; et al.
OBESITY 17 (10): 1924-1931 OCT 2009

- Causality analysis defines neural streams of orienting and holding of attention
Ozaki, TJ; Ogawa, S
NEUROREPORT 20 (15): 1371-1375 OCT 7 2009

- De novo mutations of voltage-gated sodium channel alpha(II) gene SCN2A in intractable epilepsies
Ogiwara, I; Ito, K; Sawaishi, Y; et al.
NEUROLOGY 73 (13): 1046-1053 SEP 29 2009

- Is sequencing enlightenment ending the dark age of the transcriptome?
Carninci, P
NATURE METHODS 6 (10): 711-713 OCT 2009

- Regulation of endoplasmic reticulum stress response by a BBF2H7-mediated Sec23a pathway is essential for chondrogenesis
Saito, A; Hino, SI; Murakami, T; et al.
NATURE CELL BIOLOGY 11 (10): 1197-U73 OCT 2009

- Signalling mediated by the endoplasmic reticulum stress transducer OASIS is involved in bone formation
Murakami, T; Saito, A; Hino, SI; et al.
NATURE CELL BIOLOGY 11 (10): 1205-U90 OCT 2009

- Film-thickness dependence of 10 GHz Nb coplanar-waveguide resonators
Inomata, K; Yamamoto, T; Watanabe, M; et al.
JOURNAL OF VACUUM SCIENCE&TECHNOLOGY B 27 (5): 2286-2291 SEP 2009

- An Approach to Estimate Radioadaptation from DSB Repair Efficiency
Yatagai, F; Sugasawa, K; Enomoto, S; et al.
JOURNAL OF RADIATION RESEARCH 50 (5): 407-413 SEP 2009

- Crystal Structure of a Periplasmic Substrate-Binding Protein in Complex with Calcium Lactate
Akiyama, N; Takeda, K; Miki, K
JOURNAL OF MOLECULAR BIOLOGY 392 (3): 559-565 SEP 25 2009

- Synthesis and Evaluation of Lysophosphatidylserine Analogues as Inducers of Mast Cell Degranulation. Potent Activities of Lysophosphatidylthreonine and Its 2-Deoxy Derivative
Iwashita, M; Makide, K; Nonomura, T; et al.
JOURNAL OF MEDICINAL CHEMISTRY 52 (19): 5837-5863 OCT 8 2009

- Physicochemical property changes of amino acid residues that accompany missense mutations in SCN1A affect epilepsy phenotype severity
Kanai, K; Yoshida, S; Hirose, S; et al.
JOURNAL OF MEDICAL GENETICS 46 (10): 671-679 OCT 2009

- Weak boson scattering in gauge-Higgs unification
Haba, N; Sakamura, Y; Yamashita, T
JOURNAL OF HIGH ENERGY PHYSICS (7): Art. No. 020 JUL 2009

- Semaphorin3A Signaling Mediated by Fyn-dependent Tyrosine Phosphorylation of Collapsin Response Mediator Protein 2 at Tyrosine 32
Uchida, Y; Ohshima, T; Yamashita, N; et al.
JOURNAL OF BIOLOGICAL CHEMISTRY 284 (40): 27393-27401 OCT 2 2009

- Maxillofacial reconstruction using custom-made artificial bones fabricated by inkjet printing technology
Saijo, H; Igawa, K; Kanno, Y; et al.
JOURNAL OF ARTIFICIAL ORGANS 12 (3): 200-205 2009

- Self-Assembled Monolayers with Chemical Gradients: Fabrication and Protein Adsorption Experiments
Hayashi, T; Makiuchil, N; Hara, M
JAPANESE JOURNAL OF APPLIED PHYSICS 48 (9): Art. No. 095503 Part 1 SEP 2009

- Novel Scheme of Figure-Error Correction for X-ray Nanofocusing Mirror
Handa, S; Mimura, H; Yumoto, H; et al.
JAPANESE JOURNAL OF APPLIED PHYSICS 48 (9): Art. No. 096507 Part 1 SEP 2009

- Influence of inducible nitric oxide synthase polymorphisms in Japanese patients with non-alcoholic fatty liver disease
Yoneda, M; Hotta, K; Nozaki, Y; et al.
HEPATOLOGY RESEARCH 39 (10): 963-971 OCT 2009

- The risk of exaggerated risk aversion-a life and death struggle for molecular imaging
Langstrom, B; Grahnen, A; Honore, PH; et al.
EUROPEAN JOURNAL OF NUCLEAR MEDICINE AND MOLECULAR IMAGING 36 (10): 1693-1694 OCT 2009

- Nucleocytoplasmic transport of Alp7/TACC organizes spatiotemporal microtubule formation in fission yeast
Sato, M; Okada, N; Kakui, Y; et al.
EMBO REPORTS 10 (10): 1161-1167 OCT 2009

- Long-term potentiation: two pathways meet at neurogranin
Hayashi, Y
EMBO JOURNAL 28 (19): 2859-2860 OCT 7 2009

- Dormancy and germination responses of halophyte seeds to the application of ethylene
Khan, MA; Ansari, R; Gul, B; et al.
COMPTES RENDUS BIOLOGIES 332 (9): 806-815 SEP 2009

- Spatio-temporal EEG waves in first episode schizophrenia
Alexander, DM; Flynn, GJ; Wong, W; et al.
CLINICAL NEUROPHYSIOLOGY 120 (9): 1667-1682 SEP 2009

- A two-dimensional energy surface of the phosphoryl transfer reaction catalyzed by phosphoserine phosphatase
Re, S; Jung, J; Ten-no, S; et al.
CHEMICAL PHYSICS LETTERS 480 (4-6): 284-288 OCT 8 2009

- Chiral Pd aqua complex-catalyzed asymmetric C-C bond-forming reactions: a Bronsted acid-base cooperative system
Sodeoka, M; Hamashima, Y
CHEMICAL COMMUNICATIONS (39): 5787-5798 2009

- Control of polythiophene redox potentials based on supramolecular complexation with helical schizophyllan
Haraguchi, S; Tsuchiya, Y; Shiraki, T; et al.
CHEMICAL COMMUNICATIONS (40): 6086-6088 2009

- alpha CGRP and beta CGRP transcript amount in mouse tissues of various developmental stages and their tissue expression sites
Rezaeian, AH; Isokane, T; Nishibori, M; et al.
BRAIN&DEVELOPMENT 31 (9): 682-693 OCT 2009

- Identification of novel endogenous antisense transcripts by DNA microarray analysis targeting complementary strand of annotated genes
Numata, K; Osada, Y; Okada, Y; et al.
BMC GENOMICS 10: Art. No. 392 AUG 22 2009

- Gain and loss of an intron in a protein-coding gene in Archaea: the case of an archaeal RNA pseudouridine synthase gene
Yokobori, S; Itoh, T; Yoshinari, S; et al.
BMC EVOLUTIONARY BIOLOGY 9: Art. No. 198 AUG 11 2009

- The identification and functional implications of human-specific "fixed" amino acid substitutions in the glutamate receptor family
Goto, H; Watanabe, K; Araragi, N; et al.
BMC EVOLUTIONARY BIOLOGY 9: Art. No. 224 SEP 8 2009

- Development of a high-throughput method for the systematic identification of human proteins nuclear translocation potential
Hoat, TX; Bertin, N; Ninomiya, N; et al.
BMC CELL BIOLOGY 10: Art. No. 69 SEP 22 2009

- Improved Protein Splicing Reaction for Low Solubility Protein Fragments Without Insertion of Native Extein Residues
Kamioka, T; Tawa, M; Sohya, S; et al.
BIOPOLYMERS 92 (5): 465-470 2009

- Identification, Biosynthesis, and Characterization of Polyhydroxyalkanoate Copolymer Consisting of 3-Hydroxybutyrate and 3-Hydroxy-4-methylvalerate
Tanadchangsaeng, N; Kitagawa, A; Yamamoto, T; et al.
BIOMACROMOLECULES 10 (10): 2866-2874 OCT 2009

- Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite
Hashimoto, T; de Hoon, MJL; Grimmond, SM; et al.
BIOINFORMATICS 25 (19): 2613-2616 OCT 1 2009

- TESTING THE E-peak-E-iso RELATION FOR GRBs DETECTED BY SWIFT AND SUZAKU-WAM
Krimm, HA; Yamaoka, K; Sugita, S; et al.
ASTROPHYSICAL JOURNAL 704 (2): 1405-1432 OCT 20 2009

- Proceedings of the Sixth International Conference on Photo-Excited Processes and Applications(6-ICPEPA) Preface
Sugioka, K; Peled, A
APPLIED SURFACE SCIENCE 255 (24): 9557-9557 SEP 30 2009

- Hydrogenation of carbon fragments after femtosecond laser ablation of solid C-60
Kobayashi, T; Matsuo, Y; Kurata-Nishimura, M; et al.
APPLIED SURFACE SCIENCE 255 (24): 9652-9654 SEP 30 2009

- Dynamics of ablation plasma induced by a femtosecond laser pulse in electric fields
Kurata-Nishimura, M; Kobayashi, T; Matsuo, Y; et al.
APPLIED SURFACE SCIENCE 255 (24): 9729-9733 SEP 30 2009

- Fabrication of microchannels in single-crystal GaN by wet-chemical-assisted femtosecond-laser ablation
Nakashima, S; Sugioka, K; Midorikawa, K
APPLIED SURFACE SCIENCE 255 (24): 9770-9774 SEP 30 2009

- XRD and XPS analysis of laser treated vanadium oxide thin films
Beke, S; Korosi, L; Papp, S; et al.
APPLIED SURFACE SCIENCE 255 (24): 9779-9782 SEP 30 2009

- Selective cell culture on UV transparent polymer by F-2 laser surface modification
Hanada, Y; Sugioka, K; Kawano, H; et al.
APPLIED SURFACE SCIENCE 255 (24): 9885-9888 SEP 30 2009

- Nano-aquarium with microfluidic structures for dynamic analysis of Cryptomonas and Phormidium fabricated by femtosecond laser direct writing of photostructurable glass
Hanada, Y; Sugioka, K; Kawano, H; et al.
APPLIED SURFACE SCIENCE 255 (24): 9893-9897 SEP 30 2009

- Conversion of magnetic structure by slight dopants in geometrically frustrated antiperovskite Mn3GaN
Takenaka, K; Inagaki, T; Takagi, H
APPLIED PHYSICS LETTERS 95 (13): Art. No. 132508 SEP 28 2009

- Association of BoLA-DRB3 alleles identified by a sequence-based typing method with mastitis pathogens in Japanese Holstein cows
Yoshida, T; Mukoyama, H; Furuta, H; et al.
ANIMAL SCIENCE JOURNAL 80 (5): 498-509 2009

- Association of the amino acid motifs of BoLA-DRB3 alleles with mastitis pathogens in Japanese Holstein cows
Yoshida, T; Mukoyama, H; Furuta, H; et al.
ANIMAL SCIENCE JOURNAL 80 (5): 510-519 2009

- Compensation for Systematic Cross-Contribution Improves Normalization of Mass Spectrometry Based Metabolomics Data
Redestig, H; Fukushima, A; Stenlund, H; et al.
ANALYTICAL CHEMISTRY 81 (19): 7974-7980 OCT 1 2009

- Association Studies and Gene Expression Analyses of the DISC1-Interacting Molecules, Pericentrin 2 (PCNT2) and DISC1-Binding Zinc Finger Protein (DBZ), With Schizophrenia and With Bipolar Disorder
Anitha, A; Nakamura, K; Yamada, K; et al.
AMERICAN JOURNAL OF MEDICAL GENETICS PART B-NEUROPSYCHIATRIC GENETICS 105B (7): 967-976 OCT 5 2009

- New structural insights and molecular-modelling studies of 4-methyl-5-beta-hydroxyethylthiazole kinase from Pyrococcus horikoshii OT3 (PhThiK)
Jeyakanthan, J; Thamotharan, S; Velmurugan, D; et al.
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY AND CRYSTALLIZATION COMMUNICATIONS 65: 978-986 Part 10 OCT 2009

- Crystallization and heavy-atom derivatization of StHsp14.0, a small heat-shock protein from Sulfolobus tokodaii
Hayashi, T; Abe, T; Takeda, K; et al.
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY AND CRYSTALLIZATION COMMUNICATIONS 65: 1007-1010 Part 10 OCT 2009

- Technical Pitfalls and Improvements for High-speed Screening and QSAR Analysis to Predict Inhibitors of the Human Bile Salt Export Pump (ABCB11/BSEP)
Saito, H; Osumi, M; Hirano, H; et al.
AAPS JOURNAL 11 (3): 581-589 SEP 2009

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