原著論文（英語）

  1. Mochizuki, A. and Saito, D., (2010) Analyzing steady states of dynamics of bio-molecules from the structure of regulatory networks, J. theor. Biol.266, 323-335. doi:10.1016/j.jtbi.2010.06.007

  2. Takahashi, J., Ohbayashi, A., Oginuma, M., Saito, D., Mochizuki, A., Saga, Y. and Takada, S. (2010) Analysis of Ripply1/2-deficient mouse embryos reveals a mechanism underlying the rostrocaudal patterning within a somite, Dev. Biol.342, 134-145. doi:10.1016/j.ydbio.2010.03.015

  3. Shimono, K., Sugimura, K., Kengaku, M., Uemura, T. and Mochizuki, A. (2010) Computational modeling of dendritic tiling by diffusible extracellular suppressor, Genes Cells15, 137-149. doi:10.1111/j.1365-2443.2009.01367.x

  4. Nakazato K. and Mochizuki A. (2009) Steepness of thermal gradient is essential to obtain a unified view of thermotaxis in C. elegans, J. theor. Biol.260, 56-65. doi:10.1016/j.jtbi.2009.05.027

  5. Mochizuki A. (2008) Structure of regulatory networks and diversity of gene expression patterns. J. theor. Biol. 250, 307-321. doi:10.1016/j.jtbi.2007.09.019

  6. Sugimura K., Shimono K., Uemura T. and Mochizuki A (2007) Self-organizing mechanism for development of space-filling neuronal dendrites. PLoS Comput Biol. 3(11), 2143-2154. doi:10.1371/journal.pcbi.0030212

  7. Otsuji, M., Ishihara, S., Co, C., Kaibuchi, K., Mochizuki, A., and Kuroda, K. (2007) A Mass Conserved Reaction-Diffusion System Captures Properties of Cell Polarity. PLoS Comput Biol. 3(6), 1040-1054 doi:10.1371/journal.pcbi.0030108.eor

  8. Ishihara, S., Otsuji, M. and Mochizuki, A. (2007) Transient and steady state of mass-conserved reaction-diffusion systems. Phys. Rev. E 75 (1), 015203-1 - 015203-4. doi:10.1103/PhysRevE.75.015203

  9. Nakamura, T., Mine, N., Nakaguchi, E., Mochizuki, A., Yamamoto, M., Yashiro, K., Meno, C., & Hamada, H. (2006) Generation of robust left-right asymmetry in the mouse embryo requires a self-enhancement and lateral-inhibition system. Dev. Cell 11, 495-504. doi:10.1016/j.devcel.2006.08.002

  10. Fujita, H. & Mochizuki, A. (2006) The Origin of the Diversity of Leaf Venation Pattern. Dev. Dyn. 235, 2710-2721 doi:10.1002/dvdy.20908

  11. Takigawa-Imamura, H., Mochizuki, A. (2006) Predicting regulation of the phosphorylation cycle of KaiC clock protein using mathematical analysis. J Biol. Rhythms 21, 405-416.

  12. Fujita, H. & Mochizuki, A. (2006) Pattern formation by the positive feedback regulation between flow of diffusible signal molecule and localization of its carrier. J. theor. Biol.241, 541-551. doi:10.1016/j.jtbi.2005.12.016

  13. Takigawa-Imamura, H., Mochizuki, A. (2006) Transcriptional Autoregulation by Phosphorylated and Non-Phosphorylated KaiC in Cyanobacterial Circadian Rhythms. J. theor. Biol. 241, 178-192. doi:10.1016/j.jtbi.2005.11.013

  14. Mochizuki, A., Yahara, K., Kobayashi, I. and Iwasa, Y. (2006) Genetic addiction: selfish gene's strategy for symbiosis in the genome. Genetics 172, 1309-1323. doi:10.1534/genetics.105.042895

  15. Mochizuki, A. (2005) An Analytical Study of The Number of Steady States in Gene Regulatory Networks. J. theor. Biol. 236, 291-310.doi:10.1016/j.jtbi.2005.03.015

  16. Feugier, F. G., Mochizuki, A. and Iwasa, Y. (2005) Self-organization of the vascular system in plant leaves: Inter-dependent dynamics of auxin flux and carrier proteins. J. theor. Biol. 236, 366-375.doi:10.1016/j.jtbi.2005.03.017

  17. Tohya, S., Mochizuki, A. and Iwasa, Y. (2003) Difference in the Retinal Cone Mosaic Pattern Between Zebrafish and Medaka: Cell-Rearrangement Model. J. Theor. Biol. 221, 289-300. doi:10.1006/jtbi.2003.3192

  18. Shoji, H., Mochizuki, A., Iwasa, Y., Hirata, M., Watanabe, T., Hioki, S. and Kondo, S. (2003) Origine of directionality in the fish stripe pattern. Dev. Dyn. 226, 627-633. doi: 10.1002/dvdy.10277

  19. Ryohji, T., Mochizuki, A. & Iwasa, Y. (2003) Possibility of Tissue Separation Caused by Cell Adhesion. J. theor. Biol. 221, 459-474.doi:10.1006/jtbi.2003.3193

  20. Shoji, H., Mochizuki, A., Iwasa, Y. and Kondo, S. (2002) Directionality of Stripes Formed by Anisotropic Reaction-Diffusion Models. J. Theor. Biol. 214, 549-561. doi:10.1006/jtbi.2001.2480

  21. Honda, H. and Mochizuki, A. (2002) Formation and maintenance of distinctive cell patterns by co-expression of membrane-bound ligands and their receptors. Dev. Dyn. 223, 180-192. doi: 10.1002/dvdy.10042

  22. Mochizuki, A. (2002) Pattern formation of cone mosaic in zebrafish retina: A Cell rearrangement model. J. Theor. Biol. 215, 345-361.doi:10.1006/jtbi.2001.2508

  23. Kurosawa, G., Mochizuki, A. and Iwasa, Y. (2002) Processes promoting oscillations -- comparative study of circadian clock models. J. Theor. Biol. 216, 193-208. doi:10.1006/jtbi.2002.2546

  24. Mochizuki, A. (1999) Estimating cell lineage from distributions of randomly introduced markers. J. Theor. Biol. 197, (2) 227-245.

  25. Tohya, S, Mochizuki, A., and Iwasa, Y. (1999). Formation of cone mosaic of zebrafish retina. J. Theor. Biol. 200, (2) 231-244. doi:10.1006/jtbi.1999.0990

  26. Iwasa, Y., Mochizuki, A. and Takeda, Y. (1999). The Evolution of Genomic Imprinting: Abortion and Overshoot Explain Aberrations. Evolutionary Ecology Research 1, (2) 129-150.

  27. Mochizuki, A., Wada, N., Ide, H., and Iwasa, Y. (1998). Cell-cell adhesion in limb-formation, estimated from photographs of cell sorting experiments based on a spatial stochastic model. Dev. Dyn. 211, 204-214

  28. Takesue, A., Mochizuki, A. and Iwasa, Y. (1998) Cell-Differentiation Rules that Generate Regular Mosaic Patterns: Modelling Motivated by Cone Mosaic Formation in Fish Retina. J. Theor. Biol. 194, 575-586

  29. Tohya, S., Mochizuki, A., Imayama, S. and Iwasa, Y. (1998) On Rugged shape of skin tumor (Basal cell epithelioma). J. Theor. Biol. 194, 65-78

  30. Mochizuki, A., Takeda, Y., Ide, H. and Iwasa, Y. (1997). A stochastic model for cell sorting and its application. Forma 12, 107-122.

  31. Kawasaki, K., Mochizuki, A., Matsushita, M., Umeda, T. and Shigesada, N. (1997). Modeling spatio-temporal patterns generated by Bacillus subtilis. J. Theor. Biol. 188, 177-185.

  32. Iwasa. Y., Mochizuki, A. and Takeda, Y. (1997) Evolution of genomic imprinting: Why are so few genes imprinted ? Journal of Reproduction and Development 43 Suppl., 15-16.

  33. Mochizuki, A., Takeda, Y. and Iwasa, Y. (1996). The evolution of Genomic Imprinting. Genetics 144, 1283-1295.

  34. Mochizuki, A., Iwasa, Y. and Takeda, Y. (1996). A stochastic model for cell sorting and measuring cell-cell adhesion. J. Theor. Biol. 179, 129-146.

総説等

  1. 望月敦史 (2005) 「何が細胞の多様性を作り出すのか？」． 蛋白質核酸酵素 2005年12月号 Vol. 50 No. 15 特集「数理生物学」（編集 巌佐庸）共立出版 pp. 1948-1954.

  2. (9) 望月敦史 (2005) 「生物の表面パターンと数理モデル」． 非線形・非平衡現象の数理２（三村昌泰 監修） 生物に見られるパターンとその起源 （松下貢 編） 第3章 pp. 111-147. 2005年11月刊行 東京大学出版

  3. 望月敦史. (2000) 細胞間接着・細胞間誘導による細胞の配置：トリの肢芽中胚葉細胞と魚類錐からだ細胞のパターン． 形づくりの数理と物理（本多久夫 編）共立出版 pp. 71-96.

  4. Goodwin, B. C. (翻訳：望月敦史、関村利朗) (1998) Morphogenetic cascades, taxonomy, and evolution: the dynamics of emergent forms. 数理科学 417, 62-67.; 418, 63-69.

  5. 望月敦史. (1996) 細胞選別理論の最近の発展. 生物物理 36, 149-151.

  6. 川崎広吉、望月敦史、重定南奈子 (1995) バクテリアのコロニー・パターン形成の数理モデル. 計測と制御 34, 811-816.

  7. Newman, S. A. (翻訳：望月敦史) (2000) 生物組織の形体形成． バイオミメティクスハンドブック（長田義仁 編集代表）エヌ・ティー・エス出版 第3章9節3．

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