Research Summary

Selected Publications

Papers with an asterisk(*) are based on research conducted outside of RIKEN.

• 1.*Parrish, N.F., Tomonaga, K.:
  “A Viral (Arc)hive for Metazoan Memory.”
  Cell, 172(1-2):8-10. (2018).
• 2.*Parrish, N.F., Tomonaga, K.:
  “Endogenized viral sequences in mammals.”
  Curr Opin Microbiol., 31:176-183. (2016).
• 3.*Sudmant, P.H., Rausch, T., Gardner, E.J., Handsaker, R.E., Abyzov, A., Huddleston, J., Zhang, Y., Ye, K., Jun, G., Fritz, M.H., Konkel, M.K., Malhotra, A., Stütz, A.M., Shi, X., Casale, F.P., Chen, J., Hormozdiari, F., Dayama, G., Chen, K., Malig, M., Chaisson, M.J.P., Walter, K., Meiers, S., Kashin, S., Garrison, E., Auton, A., Lam, H.Y.K., Mu, X.J., Alkan, C., Antaki, D., Bae, T., Cerveira, E., Chines, P., Chong, Z., Clarke, L., Dal, E., Ding, L., Emery, S., Fan, X., Gujral, M., Kahveci, F., Kidd, J.M., Kong, Y., Lameijer, E.W., McCarthy, S., Flicek, P., Gibbs, R.A., Marth, G., Mason, C.E., Menelaou, A., Muzny, D.M., Nelson, B.J., Noor, A., Parrish, N.F., Pendleton, M., Quitadamo, A., Raeder, B., Schadt, E.E., Romanovitch, M., Schlattl, A., Sebra, R., Shabalin, A.A., Untergasser, A., Walker, J.A., Wang, M., Yu, F., Zhang, C., Zhang, J., Zheng-Bradley, X., Zhou, W., Zichner, T., Sebat, J., Batzer, M.A., McCarroll, S.A.; 1000 Genomes Project Consortium, Mills, R.E., Gerstein, M.B., Bashir, A., Stegle, O., Devine, S.E., Lee, C., Eichler, E.E., Korbel, J.O.:
  “An integrated map of structural variation in 2,504 human genomes.”
  Nature, 526(7571):75-81. (2015).
• 4.*1000 Genomes Project Consortium, Auton, A., Brooks, L.D., Durbin, R.M., Garrison, E.P., Kang, H.M., Korbel, J.O., Marchini, J.L., McCarthy, S., McVean, G.A., Abecasis, G.R.:
  “A global reference for human genetic variation.”
  Nature, 526(7571):68-74. (2015).
• 5.*Sofuku, K., Parrish, N.F., Honda, T., Tomonaga, K.:
  “Transcription Profiling Demonstrates Epigenetic Control of Non-retroviral RNA Virus-Derived Elements in the Human Genome.”
  Cell Reports, 12(10):1548-54. (2015).
• 6.*Parrish, N.F., Fujino, K., Shiromoto, Y., Iwasaki, Y.W., Ha, H., Xing, J., Makino, A., Kuramochi-Miyagawa, S., Nakano, T., Siomi, H., Honda, T., Tomonaga, K.:
  “piRNAs derived from ancient viral processed pseudogenes as transgenerational sequence-specific immune memory in mammals.”
  RNA, 21(10):1691-703. (2015).

Recent Research Results

• 

  Oct. 31, 2023
  New tool reveals the impact of ‘jumping genes’ on diseases

• 

  Aug. 10, 2021
  Unexpected diversity in virus-derived sequences in the human genome

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Position	Deadline
Seeking a Research Scientist (IMS703-2202)	Open until filled
Seeking Postdoctoral Researcher(s) (IMS703-2201)	Open until filled

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