Research Summary

Selected Publications

Papers with an asterisk(*) are based on research conducted outside of RIKEN.

• 1. Khasnobish A, Takayasu L, Watanabe KI, Nguyen TTT, Arakawa K, Hotta O, Joh K, Nakano A, Hosomi S, Hattori M, Suda W, Morita H.:
  "Dysbiosis in the Salivary Microbiome Associated with IgA Nephropathy-A Japanese Cohort Study"
  Microbes Environ. 36(2):ME21006 (2021).
• 2. Takewaki D, Suda W, Sato W, Takayasu L, Kumar N, Kimura K, Kaga N, Mizuno T, Miyake S, Hattori M, Yamamura T.:
  "Alterations of the gut ecological and functional microenvironment in different stages of multiple sclerosis"
  Proc Natl Acad Sci U S A. 117:22402-22412 (2020).
• 3. Miyauchi E, Kim SW, Suda W, Kawasumi M, Onawa S, Taguchi-Atarashi N, Morita H, Taylor TD, Hattori M, Ohno H.:
  "Gut microorganisms act together to exacerbate inflammation in spinal cords"
  Nature. 7823:102-106 (2020).
• 4. Masuoka H, Suda W, Tomitsuka E, Shindo C, Takayasu L, Horwood P, Greenhill AR, Hattori M, Umezaki M, Hirayama K.:
  "The influences of low protein diet on the intestinal microbiota of mice."
  Sci Rep. 10:17077 (2020).
• 5. Suzuki Y, Nishijima S, Furuta Y, Yoshimura J, Suda W, Oshima K, Hattori M, Morishita S.:
  "Long-read metagenomic exploration of extrachromosomal mobile genetic elements in the human gut."
  Microbiome 71:119(2019).
• 6. *Atarashi K, Suda W, Luo C, Kawaguchi T, Motoo I, Narushima S, Kiguchi Y, Yasuma K, Watanabe E, Tanoue T, Thaiss CA, Sato M, Toyooka K, Said HS, Yamagami H, Rice SA, Gevers D, Johnson RC, Segre JA, Chen K, Kolls JK, Elinav E, Morita H, Xavier RJ, Hattori M, Honda K.:
  "Ectopic colonization of oral bacteria in the intestine drives TH1 cell induction and inflammation".
  Science. 358:359-365(2017).
• 7. *Takayasu L, Suda W, Watanabe E, Fukuda S, Takanashi K, Ohno H, Takayasu M, Takayasu H, Hattori M.:
  "A 3-dimensional mathematical model of microbial proliferation that generates the characteristic cumulative relative abundance distributions in gut microbiomes."
  PLoS One. 12:e0180863 (2017).
• 8. *Takayasu L, Suda W, Takanashi K, Iioka E, Kurokawa R, Shindo C, Hattori Y, Yamashita N, Nishijima S, Oshima K, Hattori M.:
  "Circadian oscillations of microbial and functional composition in the human salivary microbiome."
  DNA Res. 24:261-270 (2017).
• 9. *Iwasawa K, Suda W, Tsunoda T, Oikawa-Kawamoto M, Umetsu S, Inui A, Fujisawa T, Morita H, Sogo T, Hattori M.:
  "Characterisation of the faecal microbiota in Japanese patients with paediatric-onset primary sclerosing cholangitis"
  Gut 66:1344-1346 (2017).
• 10. *Nishijima S, Suda W, Oshima K, Kim SW, Hirose Y, Morita H, Hattori M.:
  "The gut microbiome of healthy Japanese and its microbial and functional uniqueness"
  DNA Res. 23:125-133 (2016).

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