Research Summary

Selected Publications

• 1.Yoshihara M, Sasamoto Y, Hayashi R, Ishikawa Y, Tsujikawa M, Hayashizaki Y, Itoh M, Kawaji H, Nishida K.:
  "High-resolution promoter map of human limbal epithelial cells cultured with keratinocyte growth factor and rho kinase inhibitor"
  Sci Rep 7: 2845. (2017)
• 2.Takamochi K, Ohmiya H, Itoh M, Mogushi K, Saito T, Hara K, Mitani K, Kogo Y, Yamanaka Y, Kawai J, Hayashizaki Y, Oh S, Suzuki K, Kawaji H.:
  "Novel biomarkers that assist in accurate discrimination of squamous cell carcinoma from adenocarcinoma of the lung"
  BMC Cancer 16: 760.(2016)
• 3.Lizio M, Harshbarger J, Shimoji H, Severin J, Kasukawa T, Sahin S, Abugessaisa I, Fukuda S, Hori F, Ishikawa-Kato S, Mungall CJ, Arner E, Baillie J, Bertin N, Bono H, de Hoon M, Diehl AD, Dimont E, Freeman TC, Fujieda K, Hide W, Kaliyaperumal R, Katayama T, Lassmann T, Meehan TF, Nishikata K, Ono H, Rehli M, Sandelin A, Schultes EA, ‘t Hoen P, Tatum Z, Thompson M, Toyoda T, Wright DW, Daub CO, Itoh M, Carninci P, Hayashizaki Y, Forrest A, Kawaji H.:
  "Gateways to the FANTOM5 promoter level mammalian expression atlas"
  Genome Biol 16: 22 (2015)
• 4.Forrest ARR, Kawaji H, Rehli M, et al.:
  "A promoter-level mammalian expression atlas"
  Nature 507:462–70 (2014)
• 5.Andersson R, Gebhard C, Miguel-Escalada I, Hoof I, Bornholdt J, Boyd M, Chen Y, Zhao X, Schmidl C, Suzuki T, Ntini E, Arner E, Valen E, Li K, Schwarzfischer L, Glatz D, Raithel J, Lilje B, Rapin N, Bagger FO, Jørgensen M, Andersen PR, Bertin N, Rackham O, Burroughs AM, Baillie JK, Ishizu Y, Shimizu Y, Furuhata E, Maeda S, Negishi Y, Mungall CJ, Meehan TF, Lassmann T, Itoh M, Kawaji H, Kondo N, Kawai J, Lennartsson A, Daub CO, Heutink P, Hume DA, Jensen TH, Suzuki H, Hayashizaki Y, Müller F, Forrest ARR, Carninci P, Rehli M, Sandelin A. 2014.:
  "An atlas of active enhancers across human cell types and tissues"
  Nature 507:455–61 (2014)
• 6.Kawaji H, Lizio M, Itoh M, et al.:
  "Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing"
  Genome Res. 24:708–717 (2014)
• 7.Kajiyama K, Okada-Hatakeyama M, Hayashizaki Y, Kawaji H, Suzuki H.:
  "Capturing drug responses by quantitative promoter activity profiling"
  CPT pharmacometrics Syst Pharmacol. 2:e77 (2013)
• 8.Kawano M, Kawaji H, Grandjean V, Kiani J, Rassoulzadegan M.:
  "Novel small noncoding RNAs in mouse spermatozoa, zygotes and early embryos"
  PLoS One. 7:e44542 (2012)
• 9.Kawaji H, Nakamura M, Takahashi Y, et al.:
  "Hidden layers of human small RNAs"
  BMC Genomics. 9:157 (2008).
• 10.Kawaji H, Frith MC, Katayama S, et al.:
  "Dynamic usage of transcription start sites within core promoters."
  Genome Biol. 7(12):R118 (2006).

Related Links

Lab Members

Contact Information