9月28日-10月4日

Published Research Papers of RIKEN Researchers

update: Sun, 04 Oct 2015 20:32:41 -0400
total number of papers: 77

• 1. A Contrast Function Based on Generalized Divergences for Solving the Permutation Problem in Convolved Speech Mixtures
  Author(s): Sarmiento, Auxiliadora; Duran-Diaz, Ivan; Cichocki, Andrzej; et al.
  Source: IEEE-ACM TRANSACTIONS ON AUDIO SPEECH AND LANGUAGE PROCESSING, 23 (11): 1713-1726 NOV 2015
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• 2. Self-organization and advective transport in the cell polarity formation for asymmetric cell division
  Author(s): Lee, Sungrim Seirin; Shibata, Tatsuo
  Source: JOURNAL OF THEORETICAL BIOLOGY, 382: 1-14 OCT 7 2015
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• 3. Dissection of two modes of IE1 sub-nuclear localization in baculovirus-infected cells
  Author(s): Nagamine, Toshihiro; Saito, Tamio; Osada, Hiroyuki; et al.
  Source: VIRUS RESEARCH, 208: 120-128 OCT 2 2015
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• 4. Genome-wide transcriptional profiling reveals that HIV-1 Vpr differentially regulates interferon-stimulated genes in human monocyte-derived dendritic cells
  Author(s): Zahoor, Muhammad Atif; Xue, Guangai; Sato, Hirotaka; et al.
  Source: VIRUS RESEARCH, 208: 156-163 OCT 2 2015
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• 5. A heavy-metal tolerant novel bacterium, Alcaligenes pakistanensis sp nov., isolated from industrial effluent in Pakistan
  Author(s): Abbas, Saira; Ahmed, Iftikhar; Iida, Toshiya; et al.
  Source: ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY, 108 (4): 859-870 OCT 2015
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• 6. Physicochemical nature of interfaces controlling ferredoxin NADP(+) reductase activity through its interprotein interactions with ferredoxin
  Author(s): Kinoshita, Misaki; Kim, Ju Yaen; Kume, Satoshi; et al.
  Source: BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS, 1847 (10): 1200-1211 OCT 2015
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• 7. Intestinal deletion of Claudin-7 enhances paracellular organic solute flux and initiates colonic inflammation in mice
  Author(s): Tanaka, Hiroo; Takechi, Maki; Kiyonari, Hiroshi; et al.
  Source: GUT, 64 (10): 1529-U209 OCT 2015
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• 8. Simultaneous prediction for independent Poisson processes with different durations
  Author(s): Komaki, Fumiyasu
  Source: JOURNAL OF MULTIVARIATE ANALYSIS, 141: 35-48 OCT 2015
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• 9. Crystal structure analysis of ornithine transcarbamylase from Thermus thermophilus-HB8 provides insights on the plasticity of the active site
  Author(s): Sundaresan, Ramya; Ebihara, Akio; Kuramitsu, Seiki; et al.
  Source: BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 465 (2): 174-179 SEP 18 2015
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• 10. Impairment of radial glial scaffold-dependent neuronal migration and formation of double cortex by genetic ablation of afadin
  Author(s): Yamamoto, Hideaki; Mandai, Kenji; Konno, Daijiro; et al.
  Source: BRAIN RESEARCH, 1620: 139-152 SEP 16 2015
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• 11. Photoelectron diffraction from laser-aligned molecules with X-ray free-electron laser pulses
  Author(s): Nakajima, Kyo; Teramoto, Takahiro; Akagi, Hiroshi; et al.
  Source: SCIENTIFIC REPORTS, 5:SEP 15 2015
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• 12. Diversification of non-visual photopigment parapinopsin in spectral sensitivity for diverse pineal functions
  Author(s): Koyanagi, Mitsumasa; Wada, Seiji; Kawano-Yamashita, Emi; et al.
  Source: BMC BIOLOGY, 13:SEP 15 2015
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• 13. Constant light enhances synchrony among circadian clock cells and promotes behavioral rhythms in VPAC(2)-signaling deficient mice
  Author(s): Hughes, Alun T. L.; Croft, Cara. L.; Samuels, Rayna E.; et al.
  Source: SCIENTIFIC REPORTS, 5:SEP 15 2015
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• 14. Regional brain disorders of serotonin neurotransmission are associated with functional dyspepsia
  Author(s): Tominaga, Kazunari; Tsumoto, Chikako; Ataka, Suzuka; et al.
  Source: LIFE SCIENCES, 137: 150-157 SEP 15 2015
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• 15. MAZR and Runx Factors Synergistically Repress ThPOK during CD8(+) T Cell Lineage Development
  Author(s): Sakaguchi, Shinya; Hainberger, Daniela; Tizian, Caroline; et al.
  Source: JOURNAL OF IMMUNOLOGY, 195 (6): 2879-2887 SEP 15 2015
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• 16. Classification of projection images of proteins with structural polymorphism by manifold: A simulation study for x-ray free-electron laser diffraction imaging
  Author(s): Yoshidome, Takashi; Oroguchi, Tomotaka; Nakasako, Masayoshi; et al.
  Source: PHYSICAL REVIEW E, 92 (3):SEP 14 2015
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• 17. Hydrogen sulfide modulates cadmium-induced physiological and biochemical responses to alleviate cadmium toxicity in rice
  Author(s): Mostofa, Mohammad Golam; Rahman, Anisur; Ansary, Md. Mesbah Uddin; et al.
  Source: SCIENTIFIC REPORTS, 5:SEP 11 2015
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• 18. Quantized topological Hall effect in skyrmion crystal
  Author(s): Hamamoto, Keita; Ezawa, Motohiko; Nagaosa, Naoto
  Source: PHYSICAL REVIEW B, 92 (11):SEP 11 2015
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• 19. Supersensitive detection and discrimination of enantiomers by dorsal olfactory receptors: evidence for hierarchical odour coding
  Author(s): Sato, Takaaki; Kobayakawa, Reiko; Kobayakawa, Ko; et al.
  Source: SCIENTIFIC REPORTS, 5:SEP 11 2015
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• 20. Magnetic three states of matter: A quantum Monte Carlo study of spin liquids
  Author(s): Kamiya, Yoshitomo; Kato, Yasuyuki; Nasu, Joji; et al.
  Source: PHYSICAL REVIEW B, 92 (10):SEP 11 2015
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• 21. Atomic-scale luminescence measurement and theoretical analysis unveiling electron energy dissipation at a p-type GaAs(110) surface
  Author(s): Imada, Hiroshi; Miwa, Kuniyuki; Jung, Jaehoon; et al.
  Source: NANOTECHNOLOGY, 26 (36):SEP 11 2015
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• 22. An isomorphous replacement method for efficient de novo phasing for serial femtosecond crystallography
  Author(s): Yamashita, Keitaro; Pan, Dongqing; Okuda, Tomohiko; et al.
  Source: SCIENTIFIC REPORTS, 5:SEP 11 2015
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• 23. Content of intrinsic disorder influences the outcome of cell-free protein synthesis
  Author(s): Tokmakov, Alexander A.; Kurotani, Atsushi; Ikeda, Mariko; et al.
  Source: SCIENTIFIC REPORTS, 5:SEP 11 2015
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• 24. Coherent acoustic perturbation of second-harmonic generation in NiO
  Author(s): Huber, L.; Ferrer, A.; Kubacka, T.; et al.
  Source: PHYSICAL REVIEW B, 92 (9):SEP 10 2015
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• 25. Relativistic hydrodynamics from quantum field theory on the basis of the generalized Gibbs ensemble method
  Author(s): Hayata, Tomoya; Hidaka, Yoshimasa; Noumi, Toshifumi; et al.
  Source: PHYSICAL REVIEW D, 92 (6):SEP 10 2015
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• 26. Nonequilibrium electronic and phonon dynamics of Cu0.17Bi2Se3 investigated by core-level and valence-band time-resolved photoemission spectroscopy
  Author(s): Yamamoto, T.; Ishida, Y.; Yoshida, R.; et al.
  Source: PHYSICAL REVIEW B, 92 (12):SEP 10 2015
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• 27. Constraints on the neutron skin and symmetry energy from the anti-analog giant dipole resonance in Pb-208
  Author(s): Cao, Li-Gang; Roca-Maza, X.; Colo, G.; et al.
  Source: PHYSICAL REVIEW C, 92 (3):SEP 10 2015
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• 28. Databases for multilevel biophysiology research available at Physiome.jp
  Author(s): Asai, Yoshiyuki; Abe, Takeshi; li, Li; et al.
  Source: FRONTIERS IN PHYSIOLOGY, 6:SEP 9 2015
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• 29. Role of PKA signaling in D2 receptor-expressing neurons in the core of the nucleus accumbens in aversive learning
  Author(s): Yamaguchi, Takashi; Goto, Akihiro; Nakahara, Ichiro; et al.
  Source: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 112 (36): 11383-11388 SEP 8 2015
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• 30. QCD Kondo effect: Quark matter with heavy-flavor impurities
  Author(s): Hattori, Koichi; Itakura, Kazunori; Ozaki, Sho; et al.
  Source: PHYSICAL REVIEW D, 92 (6):SEP 8 2015
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• 31. Giant nonlinearity via breaking parity-time symmetry: A route to low-threshold phonon diodes
  Author(s): Zhang, Jing; Peng, Bo; Ozdemir, Sahin Kaya; et al.
  Source: PHYSICAL REVIEW B, 92 (11):SEP 8 2015
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• 32. Noise suppression of on-chip mechanical resonators by chaotic coherent feedback
  Author(s): Yang, Nan; Zhang, Jing; Wang, Hui; et al.
  Source: PHYSICAL REVIEW A, 92 (3):SEP 8 2015
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• 33. New Upper Limit on Strange Quark Matter Abundance in Cosmic Rays with the PAMELA Space Experiment
  Author(s): Adriani, O.; Barbarino, G. C.; Bazilevskaya, G. A.; et al.
  Source: PHYSICAL REVIEW LETTERS, 115 (11):SEP 8 2015
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• 34. Regulation of Photosynthesis during Abiotic Stress-Induced Photoinhibition
  Author(s): Gururani, Mayank Anand; Venkatesh, Jelli; Lam-Son Phan Tran
  Source: MOLECULAR PLANT, 8 (9): 1304-1320 SEP 7 2015
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• 35. Memory Engram Cells Have Come of Age
  Author(s): Tonegawa, Susumu; Liu, Xu; Ramirez, Steve; et al.
  Source: NEURON, 87 (5): 918-931 SEP 2 2015
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• 36. The ETHYLENE RESPONSE FACTORs ERF6 and ERF11 Antagonistically Regulate Mannitol-Induced Growth Inhibition in Arabidopsis
  Author(s): Dubois, Marieke; Van den Broeck, Lisa; Claeys, Hannes; et al.
  Source: PLANT PHYSIOLOGY, 169 (1): 166-+ SEP 2015
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• 37. Inverted Scaffold: Rapid Cell-Molding with a Bubbled Medium
  Author(s): Tanaka, N.; Yanagimoto, S.; Miyake, J.
  Source: TISSUE ENGINEERING PART A, 21: S382-S382 SEP 1 2015
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• 38. Role of Ethylene and Its Cross Talk with Other Signaling Molecules in Plant Responses to Heavy Metal Stress
  Author(s): Thao, Nguyen Phuong; Khan, M. Iqbal R.; Thu, Nguyen Binh Anh; et al.
  Source: PLANT PHYSIOLOGY, 169 (1): 73-84 SEP 2015
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• 39. Transcriptome analysis of controlled and therapy-resistant childhood asthma reveals distinct gene expression profiles
  Author(s): Persson, Helena; Kwon, Andrew T.; Ramilowski, Jordan A.; et al.
  Source: JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY, 136 (3): 638-648 SEP 2015
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• 40. Genome-wide association study of recalcitrant atopic dermatitis in Korean children
  Author(s): Kim, Kyung Won; Myers, Rachel A.; Lee, Ji Hyun; et al.
  Source: JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY, 136 (3): 678-+ SEP 2015
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• 41. Increase in [F-18]-Fluoroacetate Uptake in Patients With Chronic Hemodynamic Cerebral Ischemia
  Author(s): Yamauchi, Hiroshi; Kagawa, Shinya; Kishibe, Yoshihiko; et al.
  Source: STROKE, 46 (9): 2669-2672 SEP 2015
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• 42. Identification of a flavin-containing S-oxygenating monooxygenase involved in alliin biosynthesis in garlic
  Author(s): Yoshimoto, Naoko; Onuma, Misato; Sugino, Yuka; et al.
  Source: PLANT JOURNAL, 83 (6): 941-951 SEP 2015
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• 43. Periodontal Reconstruction using Decellularized Periodontal Tissue Combined with Artificial Tooth
  Author(s): Kishida, A.; Nakamura, N.; Ito, A.; et al.
  Source: TISSUE ENGINEERING PART A, 21: S57-S57 SEP 1 2015
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• 44. Effects of Ohmic and ambipolar diffusion on formation and evolution of first cores, protostars, and circumstellar discs
  Author(s): Tsukamoto, Y.; Iwasaki, K.; Okuzumi, S.; et al.
  Source: MONTHLY NOTICES OF THE ROYAL ASTRONOMICAL SOCIETY, 452 (1): 278-288 SEP 1 2015
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• 45. Projection specificity in heterogeneous locus coeruleus cell populations: implications for learning and memory
  Author(s): Uematsu, Akira; Tan, Bao Zhen; Johansen, Joshua P.
  Source: LEARNING & MEMORY, 22 (9): 444-451 SEP 2015
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• 46. Artificial Microenvironment of Decellularized Bone Marrow Induced Hematopoiesis
  Author(s): Nakamura, N.; Kimura, T.; Nam, K.; et al.
  Source: TISSUE ENGINEERING PART A, 21: S171-S172 SEP 1 2015
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• 47. Drastic improvement of the trapped field homogeneity in a superconducting hollow bulk by the insertion of a high-J(c) superconducting cylinder for NMR bulk magnets
  Author(s): Fujishiro, Hiroyuki; Itoh, Yoshitaka; Yanagi, Yousuke; et al.
  Source: SUPERCONDUCTOR SCIENCE & TECHNOLOGY, 28 (9):SEP 2015
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• 48. Analysis of Chemical Equilibrium of Silicon-Substituted Fluorescein and Its Application to Develop a Scaffold for Red Fluorescent Probes
  Author(s): Hirabayshi, Kazuhisa; Hanaoka, Kenjiro; Takayanagi, Toshio; et al.
  Source: ANALYTICAL CHEMISTRY, 87 (17): 9061-9069 SEP 1 2015
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• 49. A gradient coil design for a high-temperature superconducting bulk magnet using the finite-difference method
  Author(s): Tamada, D.; Nakamura, T.; Kose, K.
  Source: SUPERCONDUCTOR SCIENCE & TECHNOLOGY, 28 (9):SEP 2015
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• 50. An Oceanic Impact of the Kuroshio on Surface Air Temperature on the Pacific Coast of Japan in Summer: Regional H2O Greenhouse Gas Effect
  Author(s): Takahashi, Hiroshi G.; Adachi, Sachiho A.; Sato, Tomonori; et al.
  Source: JOURNAL OF CLIMATE, 28 (18): 7128-7144 SEP 2015
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• 51. Electron and ion acceleration in relativistic shocks with applications to GRB afterglows
  Author(s): Warren, Donald C.; Ellison, Donald C.; Bykov, Andrei M.; et al.
  Source: MONTHLY NOTICES OF THE ROYAL ASTRONOMICAL SOCIETY, 452 (1): 431-443 SEP 1 2015
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• 52. The Responses of Arabidopsis Early Light-Induced Protein2 to Ultraviolet B, High Light, and Cold Stress Are Regulated by a Transcriptional Regulatory Unit Composed of Two Elements
  Author(s): Hayami, Natsuki; Sakai, Yusaku; Kimura, Mitsuhiro; et al.
  Source: PLANT PHYSIOLOGY, 169 (1): 840-+ SEP 2015
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• 53. Entorhinal-hippocampal neuronal circuits bridge temporally discontiguous events
  Author(s): Kitamura, Takashi; Macdonald, Christopher J.; Tonegawa, Susumu
  Source: LEARNING & MEMORY, 22 (9): 438-443 SEP 2015
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• 54. Human Pluripotent Stem Cell Culture on Hydrogels Grafted with Nanosegments for Feeder-free Culture
  Author(s): Higuchi, A.; Alarfaj, A. A.; Munusamy, M. A.
  Source: TISSUE ENGINEERING PART A, 21: S288-S289 SEP 1 2015
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• 55. Comparison between Monte Carlo simulation and measurement with a 3D polymer gel dosimeter for dose distributions in biological samples
  Author(s): Furuta, T.; Maeyama, T.; Ishikawa, K. L.; et al.
  Source: PHYSICS IN MEDICINE AND BIOLOGY, 60 (16): 6531-6546 AUG 21 2015
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• 56. A Temporary Gating of Actin Remodeling during Synaptic Plasticity Consists of the Interplay between the Kinase and Structural Functions of CaMKII
  Author(s): Kim, Karam; Lakhanpal, Gurpreet; Lu, Hsiangmin E.; et al.
  Source: NEURON, 87 (4): 813-826 AUG 19 2015
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• 57. Efficient decision-making by volume-conserving physical object
  Author(s): Kim, Song-Ju; Aono, Masashi; Nameda, Etsushi
  Source: NEW JOURNAL OF PHYSICS, 17:AUG 11 2015
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• 58. Global relationships in fluctuation and response in adaptive evolution
  Author(s): Furusawa, Chikara; Kaneko, Kunihiko
  Source: JOURNAL OF THE ROYAL SOCIETY INTERFACE, 12 (109):AUG 6 2015
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• 59. Poly(amino acid)s/polypeptides as potential functional and structural materials
  Author(s): Numata, Keiji
  Source: POLYMER JOURNAL, 47 (8): 537-545 AUG 2015
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• 60. Xist Exon 7 Contributes to the Stable Localization of Xist RNA on the Inactive X-Chromosome
  Author(s): Yamada, Norishige; Hasegawa, Yuko; Yue, Minghui; et al.
  Source: PLOS GENETICS, 11 (8):AUG 2015
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• 61. Pluripotency, Differentiation, and Reprogramming: A Gene Expression Dynamics Model with Epigenetic Feedback Regulation
  Author(s): Miyamoto, Tadashi; Furusawa, Chikara; Kaneko, Kunihiko
  Source: PLOS COMPUTATIONAL BIOLOGY, 11 (8):AUG 2015
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• 62. Partial Unwrapping and Histone Tail Dynamics in Nucleosome Revealed by Coarse-Grained Molecular Simulations
  Author(s): Kenzaki, Hiroo; Takada, Shoji
  Source: PLOS COMPUTATIONAL BIOLOGY, 11 (8):AUG 2015
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• 63. Experimentally Verified Parameter Sets for Modelling Heterogeneous Neocortical Pyramidal-Cell Populations
  Author(s): Harrison, Paul M.; Badel, Laurent; Wall, Mark J.; et al.
  Source: PLOS COMPUTATIONAL BIOLOGY, 11 (8):AUG 2015
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• 64. Editorial overview: Molecular imaging: Cellular imaging approaches
  Author(s): Miyawaki, Atsushi; Jaffrey, Samie R.
  Source: CURRENT OPINION IN CHEMICAL BIOLOGY, 27: V-VI AUG 2015
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• 65. THE ECCENTRIC COLLECTIVE BFKL POMERON
  Author(s): McLerran, Larry; Skokov, Vladimir V.
  Source: ACTA PHYSICA POLONICA B, 46 (8): 1513-1525 AUG 2015
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• 66. GSDM family genes meet autophagy
  Author(s): Tamura, Masaru; Shiroishi, Toshihiko
  Source: BIOCHEMICAL JOURNAL, 469: E5-E7 JUL 15 2015
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• 67. NBODY6++GPU: ready for the gravitational million-body problem
  Author(s): Wang, Long; Spurzem, Rainer; Aarseth, Sverre; et al.
  Source: MONTHLY NOTICES OF THE ROYAL ASTRONOMICAL SOCIETY, 450 (4): 4070-4080 JUL 11 2015
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• 68. EpiFactors: a comprehensive database of human epigenetic factors and complexes
  Author(s): Medvedeva, Yulia A.; Lennartsson, Andreas; Ehsani, Rezvan; et al.
  Source: DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION,JUL 7 2015
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• 69. Development of a superconducting joint between a GdBa2Cu3O7-delta-coated conductor and YBa2Cu3O7-delta bulk: towards a superconducting joint between RE (Rare Earth) Ba2Cu3O7-delta coated conductors
  Author(s): Jin, Xinzhe; Yanagisawa, Yoshinori; Maeda, Hideaki; et al.
  Source: SUPERCONDUCTOR SCIENCE & TECHNOLOGY, 28 (7):JUL 2015
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• 70. ERp44 Exerts Redox-Dependent Control of Blood Pressure at the ER
  Author(s): Hisatsune, Chihiro; Ebisui, Etsuko; Usui, Masaya; et al.
  Source: MOLECULAR CELL, 58 (6): 1015-1027 JUN 18 2015
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• 71. Halocalculus aciditolerans gen. nov., sp nov., an acid-tolerant haloarchaeon isolated from commercial salt
  Author(s): Minegishi, Hiroaki; Echigo, Akinobu; Kuwahara, Ai; et al.
  Source: INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 65 (5): 1640-1645 MAY 2015
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• 72. Halococcus agarilyticus sp nov., an agar-degrading haloarchaeon isolated from commercial salt
  Author(s): Minegishi, Hiroaki; Echigo, Akinobu; Shimane, Yasuhiro; et al.
  Source: INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 65 (5): 1634-1639 MAY 2015
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• 73. Microscopic Elastic Properties of Polycrystalline Mg85Zn6Y9 Alloy with Long-Period Stacking Ordered 18R Phase Investigated by Inelastic X-ray Scattering
  Author(s): Hosokawa, Shinya; Yamasaki, Michiaki; Kawamura, Yoshihito; et al.
  Source: MATERIALS TRANSACTIONS, 56 (7): 914-9162015
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• 74. Two site genetic incorporation of varying length polyethylene glycol into the backbone of one peptide
  Author(s): Zang, Qingmin; Tada, Seiichi; Uzawa, Takanori; et al.
  Source: CHEMICAL COMMUNICATIONS, 51 (76): 14385-143882015
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• 75. Genome-wide association study of warfarin maintenance dose in a Brazilian sample
  Author(s): Parra, Esteban J.; Botton, Mariana R.; Perini, Jamila A.; et al.
  Source: PHARMACOGENOMICS, 16 (11): 1253-12632015
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• 76. A case study on generation mechanisms of a sporadic sodium layer above Tromso (69.6 degrees N) during a night of high auroral activity
  Author(s): Takahashi, T.; Nozawa, S.; Tsuda, T. T.; et al.
  Source: ANNALES GEOPHYSICAE, 33 (8): 941-9532015
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• 77. Activation of CO2 by ionic liquid EMIM-BF4 in the electrochemical system: a theoretical study
  Author(s): Wang, Yuanqing; Hatakeyama, Makoto; Ogata, Koji; et al.
  Source: PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 17 (36): 23521-235312015
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