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仁科加速器科学研究センター 植物ゲノム進化研究チーム

チームリーダー 市田 裕之(Ph.D.)


市田 裕之 (Ph.D.)



  • 生物学


  • 農学
  • 情報学
  • 環境学
  • 複合領域
  • 総合生物
  • ゲノム生物学
  • 応用微生物学
  • 遺伝育種科学


  • 重イオンビーム
  • ゲノム解析技術
  • バイオインフォマティクス
  • DNA修復
  • 微生物育種


  • 1. Tabassum, R., Dosaka, T., Ichida, H., Morita, R., Ding, Y., Abe, T., and Katsube-Tanaka, T.:
    "FLOURY ENDOSPERM11–2 encodes plastid HSP70-2 involved with temperature dependent chalkiness of rice (Oryza sativa L.) grains"
    The Plant Journal, 103, 604–616, 2020.
  • 2. Oono, Y., Ichida, H., Morita, R., Nozawa, S, Satoh, K., Shimizu, A., Abe, T., Kato, H., and Hase, Y.:
    "Genome sequencing of ion-beam-induced mutants facilitates detection of candidate genes responsible for phenotypes of mutants in rice"
    Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis, 821, 111691, 2020.
  • 3. Morita, R.*, Ichida, H.*, Ishii, K., Hayashi, Y., Abe, H., Shirakawa, Y., Ichinose, K., Tsuneizumi, K., Kazama, T., Toriyama, K., Sato, T., and Abe, T.:
    "LONG GRAIN 1: a novel gene that regulates grain length in rice"
    Molecular Breeding, 39, article number 135 (8 pp), 2019.
  • 4. Ichida, H., Morita, R., Shirakawa, Y., Hayashi Y., Abe, T.:
    "Targeted exome sequencing of unselected heavy-ion beam-irradiated populations reveals less-biased mutation characteristics in the rice genome"
    The Plant Journal, 98, 301–314, 2019.
  • 5. Ichida, H. and Abe, T.:
    "An improved and robust method to efficiently deplete repetitive elements from complex plant genomes"
    Plant Science, 280, 455–460, 2019.
  • 6. Murata, H., Abe, T., Ichida, H., Hayashi, Y., Yamanaka, T., Shimokawa, T., and Tahara, K.:
    "Heavy-ion beam mutagenesis of the ectomycorrhizal agaricomycete Tricholoma matsutake that produces the prized mushroom ’matsutake' in conifer forests"
    Mycorrhiza, 28, 171–177, 2018.
  • 7. Yamamoto, Y.Y., Ichida, H., Hieno, A., Daich, O., Tokizawa, M., Nomoto, M., Tada, Y., Kusunoki, K., Koyama, H., and Hayami, N.:
    "Prediction of bipartite transcriptional regulatory elements using transcriptome data of Arabidopsis"
    DNA Research, 24, 271–278, 2017.
  • 8. Sato, Y., Hirano, T., Ichida, H., Murakami, M., Fukunishi, N., Abe, T., and Kawano, S.:
    "Morphological and physiological differences among cultivation lines of Undaria pinnatifida in a common garden experiment using a tank culture system"
    Journal of Applied Phycology, 29, 2287–2295, 2017.
  • 9. Ichida, H. and Long, S.R.:
    "LDSS-P: an advanced algorithm to extract functional short motifs associated with coordinated gene expression"
    Nucleic Acids Research, 44, 5045–5053, 2016.
  • 10. Ichida, H., Matsuyama, T., Ryuto, H., Hayashi, Y., Fukunishi, N., Abe, T., and Koba, T.:
    "Molecular characterization of microbial mutations induced by ion beam irradiation"
    Mutation Research, 639, 101–107, 2008.




市田 裕之


石井 公太郎


〒351-0198 埼玉県和光市広沢2-1
生物科学研究棟 S-304
Email: ichida [at] riken.jp