Research Summary

Selected Publications

• 1. Aiyoshi T, Kakihara T, Watanabe E, Tanaka N, Ogata Y, Masuoka H, Kurokawa R, Fujishiro J, Masumoto K, Suda W.:
  "A comprehensive microbial analysis of pediatric patients with acute appendicitis."
  J. Microbiol. Immunol. Infect. S1684-1182(23)00074-9 (2023)
• 2. Kawamoto S, Uemura K, Hori N, Takayasu L, Konishi Y, Katoh K, Matsumoto T, Suzuki M, Sakai Y, Matsudaira T, Adachi T, Ohtani N, Standley DM, Suda W, Fukuda S, Hara E.:
  "Bacterial induction of B cell senescence promotes age-related changes in the gut microbiota."
  Nat. Cell Biol. 25(6):865-876 (2023)
• 3. Nagata N, Takeuchi T, Masuoka H, Aoki R, Ishikane M, Iwamoto N, Sugiyama M, Suda W, Nakanishi Y, Terada-Hirashima J, Kimura M, Nishijima T, Inooka H, Miyoshi-Akiyama T, Kojima Y, Shimokawa C, Hisaeda H, Zhang F, Yeoh YK, Ng SC, Uemura N, Itoi T, Mizokami M, Kawai T, Sugiyama H, Ohmagari N, Ohno H.:
  "Human Gut Microbiota and Its Metabolites Impact Immune Responses in COVID-19 and Its Complications."
  Gastroenterology 164(2):272-288. (2023)
• 4. Furuhashi H, Takayasu L, Isshi K, Hara Y, Ono S, Kato M, Sumiyama K, Suda, W.:
  "Effect of storage temperature and flash-freezing on salivary microbiota profiles based on 16S rRNA-targeted sequencing."
  Eur. J. Oral Sci., 130(2), e12852 (2022)
• 5. Li Y, Watanabe E, Kawashima Y, Plichta DR, Wang Z, Ujike M, Ang QY, Wu R, Furuichi M, Takeshita K, Yoshida K, Nishiyama K, Kearney SM, Suda W, Hattori M, Sasajima S, Matsunaga T, Zhang X, Watanabe K, Fujishiro J, Norman JM, Olle B, Matsuyama S, Namkoong H, Uwamino Y, Ishii M, Fukunaga K, Hasegawa N, Ohara O, Xavier RJ, Atarashi K, Honda K.:
  "Identification of trypsin-degrading commensals in the large intestine."
  Nature 609(7927):582-589 (2022)
• 6. Kiguchi Y, Nishijima S, Kumar N, Hattori M, Suda W.:
  "Long-read metagenomics of multiple displacement amplified DNA of low-biomass human gut phageomes by SACRA pre-processing chimeric reads."
  DNA Res. 28(6):dsab019 (2021)
• 7. Masuoka H, Suda W, Tomitsuka E, Shindo C, Takayasu L, Horwood P, Greenhill AR, Hattori M, Umezaki M, Hirayama K.:
  "The influences of low protein diet on the intestinal microbiota of mice."
  Sci Rep. 10(1):17077 (2020)
• 8. Miyauchi E, Kim SW, Suda W, Kawasumi M, Onawa S, Taguchi-Atarashi N, Morita H, Taylor TD, Hattori M, Ohno H.:
  "Gut microorganisms act together to exacerbate inflammation in spinal cords."
  Nature 585(7823):102-106 (2020)
• 9. Takewaki D, Suda W, Sato W, Takayasu L, Kumar N, Kimura K, Kaga N, Mizuno T, Miyake S, Hattori M, Yamamura T.:
  "Alterations of the gut ecological and functional microenvironment in different stages of multiple sclerosis."
  Proc. Natl. Acad. Sci. U S A. 117(36):22402-22412 (2020)
• 10. Suzuki Y, Nishijima S, Furuta Y, Yoshimura J, Suda W, Oshima K, Hattori M, Morishita S.:
  "Long-read metagenomic exploration of extrachromosomal mobile genetic elements in the human gut."
  Microbiome 7(1):119 (2019)

Related Links

Lab Members

Contact Information