October 31, 2008

Cells traverse developmental divide via Blimp

A method for single-cell genomic profiling has helped researchers to identify a putative ‘master switch’ for reproductive cell development in the mouse embryo

Figure 1: Sox2 is among the genes upregulated by Blimp1 as part of the PGC developmental program. These cells have been fluorescently labeled to illustrate this process; Blimp1-expressing cells are labeled green, Sox2 protein is labeled red. In the right panel, cell nuclei have also been labeled with a generic staining agent and pseudo-colored white to reveal all individual cells in the specimen. Shown is a posterior part of a day 7.5 embryo.

Reproduced, with permission, from Ref. 1 © 2008 Cold Spring Harbor Laboratory Press

An animal’s reproductive capabilities are established early in development, when a homogeneous embryonic cell population gives rise to two distinct cell types—somatic cells that form the vast majority of body tissues, and primordial germ cells (PGCs) that ultimately yield spermatozoa or ova.

Identifying genes responsible for ‘programming’ PGC development will be essential to fully understand this essential developmental process. Unfortunately, existing techniques for large-scale gene expression profiling are designed for use with multicellular samples—an ineffective strategy for PGC analysis.

“PGCs are small in number—especially at early stages—and are embedded in somatic neighbors,” explains Mitinori Saitou, of the RIKEN Center for Developmental Biology in Kobe. “Therefore, for systematically identifying genes specific to PGCs, single-cell analysis is considered to be essential.” Prior work from Saitou’s team identified several genes potentially important to PGC development. Now, his group has developed a powerful new technique for preparation and amplification of nucleic acids from individual cells, enabling stage-specific genomic profiling of mouse PGCs in unprecedented detail1.

The researchers focused on identifying genes regulated by Blimp1, a gene identified in their earlier work2. After analyzing PGCs from various developmental stages, it became clear that Blimp1 expression specifically increases in these cells over time. They also observed that although early-stage PGCs exhibit expression profiles for certain developmental genes that are similar to those observed in somatic cells, continued expression of Blimp1 leads to reversal of these expression patterns, actively driving development onto a PGC-specific trajectory (Fig. 1).

A broader comparison of stage-specific gene expression in PGCs and somatic cells enabled Saitou’s team to assemble clusters of genes that are generally up- or down-regulated by Blimp1, allowing them to be categorized respectively as ‘specification’ or ‘somatic’ genes. Certain gene types were enriched for each category—including cell division regulators for the somatic genes and effectors of germ cell development for the specification genes—and each category also contained distinct sets of genes involved in embryonic development and body pattern formation.

Follow-up analyses confirmed that Blimp1 plays a central role in managing appropriate regulation of both somatic and specification genes for PGC development. “To me, the fact that Blimp1 represses essentially all the genes normally repressed in PGCs in comparison to their somatic neighbors is the most important finding,” says Saitou. Now, having glimpsed the ‘big picture’, Saitou’s team hunting for the primary target genes for Blimp1, and the mechanism by which it switches them on to set PGC development in motion.


  1. Kurimoto, K., Yabuta, Y., Ohinata, Y., Shigeta, M., Yamanaka, K. & Saitou, M. Complex genome-wide transcription dynamics orchestrated by Blimp1 for the specification of the germ cell lineage in mice. Genes & Development 22, 1617–1635 (2008). |  | (Link)
  2. Ohinata, Y., Payer, B., O’Carroll, D., Ancelin, K., Ono, Y., Sano, M., Barton, S.C., Obukhanych, T., Nussenzweig, M., Tarakhovsky, A., et al. Blimp1 is a critical determinant of the germ cell lineage in mice. Nature 436, 207–213 (2005).