RIKEN Center for Sustainable Resource Science Metabolome Informatics Research Team

Team Leader: Masanori Arita (D.Sc.)

Japanese Page

Research Summary

Our team develops software platforms necessary for metabolomic analyses, network analyses and computer simulations. We also design databases that help more efficient identification of metabolites. The developed software will be applied to integrated analysis of metabolomic and transcriptomic data collated by other teams to enable systematic understanding of plants.

Main Research Fields

Complex Systems

Related Research Fields

Interdisciplinary Science & Engineering
Biological Sciences

Keywords

Genome
Database
Metabolome
Algorithm

Selected Publications

1. Tsugawa H, Nakabayashi R, Mori T, Yamada Y, Takahashi M, Rai A, Sugiyama R, Yamamoto H, Nakaya T, Yamazaki M, Kooke R, Bac-Molenaar JA, Oztolan-Erol N, Keurentjes JJB, Arita M, Saito K.
"A cheminformatics approach to characterize metabolomes in stable-isotope-labeled organisms"
Nature Methods, 16(4), 295-298 (2019)
2. Tsugawa H, Ikeda K, Takahashi M, Satoh A, Mori Y, Uchino H, Okahashi N, Yamada Y, Tada I, Bonini P, Higashi Y, Okazaki Y, Zhou Z, Zhu ZJ, Koelmel J, Cajka T, Fiehn O, Saito K, Arita M, Arita M.
"A lipidome atlas in MS-DIAL 4"
Nature Biotechnology, 38(10), 1159-1163 (2020)
3. Koistinen V, Kärkkäinen O, Keski-Rahkonen P, Tsugawa H, Scalbert A, Arita M, Wishart D, Hanhineva K.
"Towards a Rosetta stone for metabolomics: recommendations to overcome inconsistent metabolite nomenclature"
Nature Metabolism, 5(3), 351-354 (2023)
4. Moseley HNB, Rocca-Serra P, Salek RM, Arita M, Schymanski EL.
"InChI isotopologue and isotopomer specifications."
Journal of Cheminformatics, 16(1), 54 (2024)