RIKEN Center for Sustainable Resource Science Metabolome Informatics Research Team
Team Director: Masanori Arita (D.Sc.)
Research Summary

Our team develops software platforms necessary for metabolomic analyses, network analyses and computer simulations. We also design databases that help more efficient identification of metabolites. The developed software will be applied to integrated analysis of metabolomic and transcriptomic data collated by other teams to enable systematic understanding of plants.
Main Research Fields
- Complex Systems
Related Research Fields
- Interdisciplinary Science & Engineering
- Biological Sciences
Keywords
- Genome
- Database
- Metabolome
- Algorithm
Selected Publications
- 1.
Tsugawa H, Nakabayashi R, Mori T, Yamada Y, Takahashi M, Rai A, Sugiyama R, Yamamoto H, Nakaya T, Yamazaki M, Kooke R, Bac-Molenaar JA, Oztolan-Erol N, Keurentjes JJB, Arita M, Saito K.
"A cheminformatics approach to characterize metabolomes in stable-isotope-labeled organisms"
Nature Methods, 16(4), 295-298 (2019) - 2.
Tsugawa H, Ikeda K, Takahashi M, Satoh A, Mori Y, Uchino H, Okahashi N, Yamada Y, Tada I, Bonini P, Higashi Y, Okazaki Y, Zhou Z, Zhu ZJ, Koelmel J, Cajka T, Fiehn O, Saito K, Arita M, Arita M.
"A lipidome atlas in MS-DIAL 4"
Nature Biotechnology, 38(10), 1159-1163 (2020) - 3.
Koistinen V, Kärkkäinen O, Keski-Rahkonen P, Tsugawa H, Scalbert A, Arita M, Wishart D, Hanhineva K.
"Towards a Rosetta stone for metabolomics: recommendations to overcome inconsistent metabolite nomenclature"
Nature Metabolism, 5(3), 351-354 (2023) - 4.
Moseley HNB, Rocca-Serra P, Salek RM, Arita M, Schymanski EL.
"InChI isotopologue and isotopomer specifications."
Journal of Cheminformatics, 16(1), 54 (2024)
Recent Research Results
Nov. 21, 2014
Evolving the best body clock
Related Links
Lab Members
Principal investigator
- Masanori Arita
- Team Director
Core members
- Xin Tong
- Special Postdoctoral Researcher
- Shohei Nakamukai
- Postdoctoral Researcher
- Mikiko Takahashi
- Technical Staff I
- Yutaka Yamada
- Technical Staff I
Contact Information
1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama City, Kanagawa, 230-0045, Japan
Email: Masanori.arita@riken.jp