Research Summary

Selected Publications

• 1. Kawakami E, Tabata J, Yanaihara N, Ishikawa T, Koseki K, Iida Y, Saito M, Komazaki H, Shapiro JS, Goto C, Akiyama Y, Saito R, Saito M, Takano H, Yamada K, Okamoto A.
  "Application of Artificial Intelligence for Preoperative Diagnostic and Prognostic Prediction in Epithelial Ovarian Cancer Based on Blood Biomarkers."
  Clinical cancer research, 25(10) 3006-3015 (2019)
• 2. Kawakami E, Singh VK, Matsubara K, Ishii T, Matsuoka Y, Hase T, Kulkarni P, Siddiqui K, Kodilkar J, Danve N, Subramanian I, Katoh M, Shimizu-Yoshida Y, Ghosh S, Jere A, Kitano H.
  "Network analyses based on comprehensive molecular interaction maps reveal robust control structures in yeast stress response pathways."
  NPJ systems biology and applications, 2 15018-15018 (2016)
• 3. Kawakami E, Nakaoka S, Ohta T, Kitano H.
  "Weighted enrichment method for prediction of transcription regulators from transcriptome and global chromatin immunoprecipitation data."
  Nucleic Acids Research, 44(11) 5010-5021 (2016)
• 4. Tanabe H, Sato M, Miyake A, Shimajiri Y, Ojima T, Narita A, Saito H, Tanaka K, Masuzaki H, Kazama JJ, Katagiri H, Tamiya G, Kawakami E, Shimabukuro M.
  "Machine learning-based reproducible prediction of type 2 diabetes subtypes."
  Diabetologia, 67(11):2446-2458 (2024)
• 5. Kawakami E, Adachi N, Senda T, Horikoshi M.
  "Leading role of TBP in the Establishment of Complexity in Eukaryotic Transcription Initiation Systems."
  Cell Reports, 21(13) 3941-3956 (2017)
• 6. Koseki K, Kawasaki H, Atsugi T, Nakanishi M, Mizuno M, Naru E, Ebihara T, Amagai M, Kawakami E.
  "Assessment of skin barrier function using skin images with topological data analysis."
  NPJ systems biology and applications 6(1) 40-40 (2020)
• 7. Kawakami E, Kobayashi N, Ichihara Y, Ishikawa T, Choe H, Tomoyama A, Inaba Y.
  "Monitoring of blood biochemical markers for periprosthetic joint infection using ensemble machine learning and UMAP embedding."
  Archives of orthopaedic and trauma surgery, 143(10):6057-6067 (2023)
• 8. Komaki S, Sahoyama Y, Hachiya T, Koseki K, Ogata Y, Hamazato F, Shiozawa M, Nakagawa T, Suda W, Hattori M, Kawakami E.
  "Dimension reduction of microbiome data linked Bifidobacterium and Prevotella to allergic rhinitis."
  Scientific reports 14(1) 7983-7983 (2024)
• 9. Morita A, Iida Y, Inaba Y, Tezuka T, Kobayashi N, Choe H, Ike H, Kawakami E.
  "Preoperative prediction for periprosthetic bone loss and individual evaluation of bisphosphonate effect after total hip arthroplasty using artificial intelligence."
  Bone & Joint Research, 13(4):184-192 (2024)
• 10. Ikeda K, Nakada T, Kageyama T, Tanaka S, Yoshida N, Ishikawa T, Goshima Y, Otaki N, Iwami S, Shimamura S, Taniguchi T, Igari H, Hanaoka H, Yokote K, Tsuyuzaki K, Nakajima H, Kawakami E.
  "Detecting time-evolving phenotypic components of adverse reactions against BNT162b2 SARS-CoV-2 vaccine via non-negative tensor factorization."
  iScience 25(10) 105237-105237 (2022)

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