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Jul. 14, 2021 Research Highlight Biology

Structural study of photosystem I containing chlorophyll d provides hints of how it harnesses low-energy light

High-resolution images of a form of unique pigments found in a photosynthetic membrane protein complex of a marine bacterium reveal how it can live in low-light conditions

RRFY202116.jpg Figure 1: A cryo-electron microscopy density map of Acaryochloris marina photosystem I reveals structural elements that allow it to convert low-energy light into chemical energy. Modified from Ref. 1 and licensed under CC BY 4.0 [https://creativecommons.org/licenses/by/4.0/] © 2021 T. Hamaguchi, K. Kawakami et al.

A high-resolution structural analysis by RIKEN biochemists of photosystem I, which contains chlorophyll d and pheophytin a, the light-absorbing pigments found in a marine bacterium, could help scientists discover how the microbe survives in the low-energy light conditions of the deep sea1.

In photosynthesis, plants, algae and some bacteria harness energy from sunlight to create oxygen and carbohydrates from carbon dioxide and water. Chlorophyll, the pigment responsible for giving plants their green color, plays a major role in absorbing sunlight and converting it into a useful form of chemical energy.

Scientists used to believe that photosystem I, the membrane protein complex present in all aerobic organisms, utilized a form of chlorophyll called chlorophyll a for photosynthesis. But that changed when a marine cyanobacterium was discovered in the 1990s that employs a different form of chlorophyll; Acaryochloris marina uses chlorophyll d to harness far-red wavelengths of light, whose energy was previously considered to be too low to be useful for typical organisms.

“How A. marina uses low-energy light for photosynthesis has been a long-standing question,” notes Koji Yonekura, who leads the Biostructural Mechanism Group at the RIKEN SPring-8 Center.

RRFY202116_researcher.jpg Keisuke Kawakami (left), Koji Yonekura (center) and Tasuku Hamaguchi (right) have analyzed the structure of a low-energy photosynthesizing super complex from deep-sea cyanobacteria.© 2021 RIKEN SPring-8 Center

Now, Tasuku Hamaguchi, Keisuke Kawakami, Yonekura and their colleagues have shed light on this question by analyzing the structure of the photosystem I reaction center—the part of chlorophyll that converts sunlight into a form of chemical energy that can be used by the rest of the photosynthetic machinery—of chlorophyll d in A. marina (Fig. 1). They realized this by using cryo-electron microscopy at a higher resolution than has been applied to look at these protein complexes before.

The researchers’ analysis revealed that one of the light-harvesting pigments is pheophytin a, a metal-free chlorin that differs from other type I reaction centers. This exquisite combination of pheophytin a and chlorophyll d helps to explain some ways that the cyanobacterium can efficiently harness the low energy of far-red light for photosynthesis.

The team’s findings could help us better understand how photosynthetic organisms are able to survive in extremely low-light environments, both here on Earth and potentially beyond. A. marina is found in extremely low-light regions of the ocean, and it’s possible that life beyond Earth could exist in similar low-light environments.

The researchers realized the unprecedented resolution in this study by using a cryogenic electron microscopy producing superior high-resolution images with a highly coherent electron beam.

The team intends to continue their research of this mysterious organism and its method of converting light into chemical energy. They are also applying the same technique to investigate other biological macromolecules. “We’re performing high-resolution single-particle cryogenic electron microscopy of other biologically important targets,” says Yonekura.

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  • 1. Hamaguchi, T., Kawakami, K., Shinzawa-Itoh, K., Inoue-Kashino, N., Itoh, S., Ifuku, K., Yamashita, E., Maeda, K., Yonekura, K. & Kashino, Y. Structure of the far-red light utilizing photosystem I of Acaryochloris marina. Nature Communications 12, 2333 (2021). doi: 10.1038/s41467-021-22502-8