Research Summary

Selected Publications

• 1. Kuchikata H, Sano M, Fujiwara F, Murashima K, Kumaishi K, Narukawa M, Nose Y, Kobayashi M, Hamamoto S, Kobayashi NI, Sugiyama A, Nihei N, Ichihashi Y, Kusano M:
  "Soil volatilomics uncovers tight linkage between soybean presence and soil omics profiles in agricultural fields"
  Sci. Rep. 14, 20541 (2024)
• 2. Miyamoto H, Shigeta K, Suda W, Ichihashi Y, Nihei N, Matsuura M, Tsuboi A, Tominaga N, Aono M, Sato M, Taguchi S, Nakaguma T, Tsuji N, Ishii C, Matsushita T, Shindo C, Ito T, Kato T, Kurotani A, Shima H, Moriya S, Wada S, Horiuchi S, Satoh T, Mori K, Nishiuchi T, Miyamoto H, Kodama H, Hattori M, Ohno H, Kikuchi J, Yokota Hirai M:
  "An agroecological structure model of compost – soil - plant interactions for sustainable organic farming"
  ISME COMMUN. 3, 28 (2023)
• 3. Fujiwara F, Miyazawa K, Nihei N, Ichihashi Y:
  "Agroecosystem Engineering Extended from Plant-Microbe Interactions Revealed by Multi-Omics Data"
  Bioscience, Biotechnology, and Biochemistry 87(1), 21-27 (2023)
• 4. Dang T, Kumaishi K, Usui E, Kobori S, Sato T, Toda Y, Yamasaki Y, Tsujimoto H, Ichihashi Y, Iwata H:
  "Stochastic variational variable selection for high-dimensional microbiome data"
  Microbiome 10(1), 236 (2022)
• 5. Kumaishi K, Usui E, Suzuki K, Kobori S, Sato T, Toda Y, Takanashi H, Shinozaki S, Noda M, Takakura A, Matsumoto K, Yamasaki Y, Tsujimoto H, Iwata H, Ichihashi Y:
  "High throughput method of 16S rRNA gene sequencing library preparation for plant root microbial community profiling"
  Sci. Rep. 12, 19289 (2022)
• 6. Fujii T, Minami M, Watanabe T, Sato Takumi Kumaishi K, Ichihashi Y:
  "Characterization of inter-annual changes in soil microbial lora of Panax ginseng cultivation fields in Shimane Prefecture of Western Japan by DNA metabarcoding using next-generation sequencing"
  J. Nat. Med. 75, 1067–1079 (2021)
• 7. Ichihashi Y, Date Y, Shino A, Shimizu T, Shibata A, Kumaishi K, Funahashi F, Wakayama K, Yamazaki K, Umezawa A, Sato T, Kobayashi M, Kamimura M, Kusano M, Che F-S, O`Brien M, Tanoi K, Hayashi M, Nakamura R, Shirasu K, Kikuchi J, Nihei N:
  "Multi-omics analysis on an agroecosystem reveals the significant role of organic nitrogen to increase agricultural crop yield"
  Proc. Natl. Acad. Sci. USA. 117(25), 14552-14560 (2020)
• 8. Notaguchi M, Kurotani K, Sato Y, Tabata R, Kawakatsu Y, Okayasu K, Sawai Y, Okada R, Asahina M, Ichihashi Y, Shirasu K, Suzuki T, Niwa M, Higashiyama T:
  "Cell–cell adhesion in plant grafting is facilitated by β-1,4-glucanases"
  Science 369(6504), 698-702 (2020)
• 9. Toju H, Peay KG, Yamamichi M, Narisawa K, Hiruma K, Naito K, Fukuda S, Ushio M, Nakaoka S, Onoda Y, Yoshida K, Schlaeppi K, Bai Y, Sugiura R, Ichihashi Y, Minamisawa K, Kiers ET:
  "Core microbiomes for sustainable agroecosystems"
  Nat. Plants 4, 247-257 (2018)
• 10. Ichihashi Y, Aguilar-Martínez JA, Farhi M, Chitwood DH, Kumar R, Millon LV, Peng J, Maloof JN, Sinha NR:
  "Evolutionary developmental transcriptomics reveals a gene network module regulating interspecific diversity in plant leaf shape"
  Proc. Natl. Acad. Sci. USA. 111(25): E2616-E2621 (2014)

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