RIKEN Center for Sustainable Resource Science Plant Symbiosis Research Team
Team Leader: Makoto Hayashi (Ph.D.)
Research Summary

Nitrogen is the most heavily used fertilizer in the present agriculture. Its production and use however damage the ecosystem due to the emission of greenhouse gases. Soil bacteria called rhizobia infect legume roots, and fix atmospheric nitrogen in root nodules. Consequently, if cereals such as rice, corn and wheat establish symbiosis with rhizobia, we can dramatically reduce the use of nitrogen fertilizer, resulted in ecosystem-friendly, sustainable agriculture. In order to achieve our goal, we aim to confer the ability to fix nitrogen on cereals, by elucidating molecular-genetic and biochemical functions of nodulation and symbiotic nitrogen fixation, as well as by investigating evolutionary aspects of legume-rhizobia symbiosis.
Main Research Fields
- Biology
Related Research Fields
- Agricultural Sciences
Keywords
- Plant-microbe interaction/Symbiosis
- Biological interaction
Selected Publications
- 1.
Battenberg K, Kelly ST, Ras RA, Hetherington NA, Hayashi M, Minoda A.:
"A flexible cross-platform single-cell data processing pipeline"
Nat. Commun. 13: 6847 (2022). - 2.
Yamazaki A, Battenberg K, Shimoda Y, Hayashi M.:
"NDR1/HIN1-Like Protein 13 Interacts with Symbiotic Receptor Kinases and Regulates Nodulation in Lotus japonicus"
Mol. Plant Microbe Interact. 35: 845-856 (2022). - 3.
Battenberg K, Hayashi M
"Evolution of root nodule symbiosis: Focusing on the transcriptional regulation from the genomic point of view"
Plant Biotechnol. 39: 79-83 (2022). - 4.
Ratu STN, Teulet A, Miwa H, Masuda S, Nguyen HP, Yasuda M, Sato S, Kaneko T, Hayashi M, Giraud E, Okazaki S.:
"Rhizobia use a pathogenic-like effector to hijack leguminous nodulation signalling"
Sci. Rep. 11: 2034 (2021). - 5.
Soyano T, Liu M, Kawaguchi M, Hayashi M.:
"Leguminous nodule symbiosis involves recruitment of factors contributing to lateral root development"
Curr. Opin. Plant Biol. 59: 102000 (2021). - 6.
Ichihashi Y, Hakoyama T, Iwase A, Shirasu K, Sugimoto K, Hayashi M.:
"Common Mechanisms of Developmental Reprogramming in Plants—Lessons from Regeneration, Symbiosis, and Parasitism"
Front. Plant Sci. 11: 1084 (2020). - 7.
Ichihashi Y, Date Y, Shino A, Shimizu T, Shibata A, Kumaishi K, Funahashi F, Wakayama K, Yamazaki K, Umezawa A, Sato T, Kobayashi M, Kamimura M, Kusano M, Che FS, O Brien M, Tanoi K, Hayashi M, Nakamura R, Shirasu K, Kikuchi J, Nihei N.:
"Multi-omics analysis on an agroecosystem reveals the significant role of organic nitrogen to increase agricultural crop yield"
Proc. Natl. Acad. Sci. USA 117: 14552-14560 (2020). - 8.
Shimoda Y, Nishigaya Y, Yamaya-Ito H, Inagaki N, Umehara Y, Hirakawa H, Sato S, Yamazaki T, Hayashi M.:
"The rhizobial autotransporter determines the symbiotic nitrogen fixation activity of Lotus japonicus in a host-specific manner"
Proc. Natl. Acad. Sci. USA 117: 1806-1815 (2020). - 9.
Soyano T, Shimoda Y, Kawaguchi M, Hayashi M.:
"A shared gene drives lateral root development and root nodule symbiosis pathways in Lotus"
Science 366: 1021-1023 (2019). - 10.
Shimoda Y, Imaizumi-Anraku H, Hayashi M.:
"Kinase activity-dependent stability of calcium/calmodulin-dependent protein kinase of Lotus japonicus"
Planta 250: 1773-1779 (2019).
Recent Research Results
Related Links
Lab Members
Principal investigator
- Makoto Hayashi
- Team Leader
Core members
- Akihiro Yamazaki
- Research Scientist
- Akira Akamatsu
- Research Scientist
- Atsuko Hirota
- Technical Staff I
Contact Information
1-7-22 Suehiro-cho, Tsurumi-ku,
Yokohama City, Kanagawa,
230-0045, Japan
Tel: +81-(0)45-503-9493
Fax: +81-(0)45-503-9492
Email: makoto.hayashi@riken.jp