Research Summary

Selected Publications

Papers with an asterisk(*) are based on research conducted outside of RIKEN.

• 1. *Masuda, S., Gan, P., Kiguchi, Y., Anda, M., Sasaki, K., Shibata, A., Iwasaki, W., Suda, W., and Shirasu, K.:
  "Uncovering plant microbiomes using long-read metagenomic sequencing"
  Communications Biology, 7, 357. (2024).
• 2. *Anda, M., Yamanouchi, S., Cosentino, S., Sakamoto, M., Ohkuma, M., Takashima, M., Toyoda, A., and Iwasaki, W.:
  "Bacteria can maintain rRNA operons solely on plasmids for hundreds of millions of years"
  Nature Communications, 14, 7232. (2023).
• 3. *Hiraoka, S., Okazaki, Y., Anda, M., Toyoda, A., Nakano, S., and Iwasaki, W.:
  "Metaepigenomic analysis reveals the unexplored diversity of DNA methylation in an environmental prokaryotic community"
  Nature Communications, 10, 159. (2019).
• 4. *Le-Ha, T., Le, L., Le-Vo, H., Anda, M., Motooka, D., Nakamura, S., Tran, L.K., Tran, P.T., Iida, T., and Cao, V.:
  "Characterization of a carbapenem- and colistin-resistant Enterobacter cloacae carrying Tn6901 in blaNDM-1 genomic context"
  Infection and Drug Resistance, 12, 733–742. (2019).
• 5. *Minami, T., Anda, M., Mitsui, H., Sugawara, M., Kaneko, T., Sato, S., Ikeda, S., Okubo, T., Tsurumaru, H., and Minamisawa, K.:
  "Metagenomic analysis revealed methylamine and ureide utilization of soybean-associated Methylobacterium"
  Microbes and Environments, 31, 268–278. (2016).
• 6. *Anda, M., Ohtsubo, Y., Okubo, T., Sugawara, M., Nagata, Y., Tsuda, M., Minamisawa, M., and Mitsui, H.:
  "Bacterial clade with the ribosomal RNA operon on a small plasmid rather than the chromosome"
  Proceedings of the National Academy of Sciences of the United States of America, 112, 14343–14347. (2015).
• 7. *Iida, T., Itakura, M., Anda, M., Sugawara, M., Isawa, T., Okubo, T., Sato, S., Kakizaki, K., and Minamisawa, K.:
  "Symbiosis island shuffling with abundant insertion sequences in the genomes of extra-slow-growing strains of soybean bradyrhizobia"
  Applied and Environmental Microbiology, 81, 4143–4154. (2015).
• 8. *Bao, Z., Okubo, T., Kubota, K., Kasahara, Y., Tsurumaru, H., Anda, M., Ikeda, S., and Minamisawa, K.:
  "Metaproteomic identification of diazotrophic methanotrophs and their tissue localization in field-grown rice roots"
  Applied and Environmental Microbiology, 80, 5043–5052. (2014).
• 9. *Anda, M., Ikeda, S., Eda, S., Okubo, T., Sato, S., Tabata, S., Mitsui, H., and Minamisawa, K.:
  "Isolation and genetic characterization of Aurantimonas and Methylobacterium strains from stems of hypernodulated soybeans"
  Microbes and Environments, 26, 172–180. (2011).
• 10. *Ikeda, S., Anda, M., Inaba, S., Eda, S., Sato, S., Sasaki, S., Tabata, S., Mitsui, H., Sato, T., Shinano, T., and Minamisawa, K.:
  "Autoregulation of nodulation interferes with impacts of nitrogen fertilization levels on leaf-associated bacterial community in soybean"
  Applied and Environmental Microbiology, 77, 1973–1980. (2010).

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