Research Summary

Selected Publications

Papers with an asterisk(*) are based on research conducted outside of RIKEN.

• 1. Ramilowski J, Yip CW, et al.
  "Functional Annotation of Human Long Non-Coding RNAs via Molecular Phenotyping."
  bioRxiv, 700864(2019) doi.org/10.1101/700864
• 2. Yuuri Yasuoka
  "Enhancer Evolution in Chordates: Lessons from Functional Analyses of Cephalochordate Cis-Regulatory Modules."
  Development, Growth & Differentiation, in press doi: 10.1111/dgd.12684
• 3. Yuuri Yasuoka
  "Morphogenetic Mechanisms Forming the Notochord Rod: the Turgor Pressure-Sheath Strength Model."
  Development, Growth & Differentiation, in press doi: 10.1111/dgd.12665
• 4. Yuuri Yasuoka
  "Evolution of cis-regulatory modules for the head organizer gene goosecoid in chordates: comparisons between Branchiostoma and Xenopus."
  Zoological Letters, 5,27 (2019)
• 5. *Borna NN, Kishita Y, Kohda M, Lim SC, Shimura M, Wu Y, Mogushi K, Yatsuka Y, Harashima H, Hisatomi Y, Fushimi T, Ichimoto K, Murayama K, Ohtake A, Okazaki Y
  "Mitochondrial ribosomal protein PTCD3 mutations cause oxidative phosphorylation defects with Leigh syndrome."
  Neurogenetics 20, 9-25(2019)
• 6. Hashimoto K, Kouno T, Ikawa T, Hayatsu N, Miyajima Y, Yabukami H, Terooatea T, Sasaki T, Suzuki T, Valentine M, Pascarella G, Okazaki Y, Suzuki H, Shin Y, Minoda A, Taniuchi I, Okano H, Arai Y, Hirose N, Carninci P
  "Single-cell transcriptomics reveals expansion of cytotoxic CD4 T cells in supercentenarians."
  Proc Nat Acad Sci 116, 24242-24251(2019)
• 7. Yoshida S, Kim S, Wafula EK, Tanskanen J, Kim YM, Honaas L, Yang Z, Spallek T, Conn CE, Ichihashi Y, Cheong K, Cui S, Der JP, Gundlach H, Jiao Y, Hori C, Ishida JK, Kasahara H, Kiba T, Kim MS, Koo N, Laohavisit A, Lee YH, Lumba S, McCourt P, Mortimer JC, Mutuku JM, Nomura T, Sasaki-Sekimoto Y, Seto Y, Wang Y, Wakatake T, Sakakibara H, Demura T, Yamaguchi S, Yoneyama K, Manabe RI, Nelson DC, Schulman AH, Timko MP, dePamphilis CW, Choi D, Shirasu K
  "Genome Sequence of Striga asiatica Provides Insight into the Evolution of Plant Parasitism."
  Curr Biol. 29(18), 3041-3052.e4.(2019) doi: 10.1016/j.cub.2019.07.086.
• 8. Sriswasdi S, Takashima M, Manabe RI, Ohkuma M, Iwasaki W
  "Genome and transcriptome evolve separately in recently hybridized Trichosporon fungi."
  Commun Biol. 2,263(2019) doi: 10.1038/s42003-019-0515-2.
• 9. Takashima M, Manabe RI, Ohkuma M
  "Draft Genome Sequences of Basidiomycetous Epiphytic Phylloplane Yeast Type Strains Dioszegia crocea JCM 2961 and Dioszegia aurantiaca JCM 2956."
  Microbiol Resour Announc. 8(26) pii: e01727-18(2019) doi: 10.1128/MRA.01727-18.
• 10. Takashima M, Manabe RI, Nishimura Y, Endoh R, Ohkuma M, Sriswasdi S, Sugita T, Iwasaki W
  "Recognition and delineation of yeast genera based on genomic data: Lessons from Trichosporonales."
  Fungal Genet Biol. 130, 31-42(2019) doi: 10.1016/j.fgb.2019.04.013.

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