Research Summary

Selected Publications

Papers with an asterisk(*) are based on research conducted outside of RIKEN.

• 1. Ozaki K, Irioka T, Uchihara T, Yamada A,Nakamura A,Majima T,Igarashi S, Shintaku H,Yakeishi M, Tsuura Y, Okazaki Y,Ishikawa K, Yokota T,
  "Neuropathology of SCA34 showing widespread oligodendroglial pathology with vacuolar white matter degeneration: a case study
  Acta Neuropathol Commun. 9(1)172(2021) doi: 10.1186/s40478-021-01272-w.
• 2. Yasuoka Y, Taira M
  "LIM homeodomain proteins and associated partners: Then and now
  Current Topics in Developmental Biology. 145,113-166(2021) doi: 10.1016/bs.ctdb.2021.04.003.
• 3. Inaba A, Arinaga A, Tanaka K, Endo T, Hayatsu N, Okazaki Y, Yamane T, Oishi Y, Imai H, Iwatsuki K
  "Interleukin-4 Promotes Tuft Cell Differentiation and Acetylcholine Production in Intestinal Organoids of Non-Human Primate"
  Int J Mol Sci. 22(15)7921(2021) doi: 10.3390/ijms22157921.
• 4. Takata S, Amitani H, Endo M, Yuki H, Ramilowski J, Severin J, Manabe R, Watanabe T, Ozaki K, Kaneko A, Kajita H, Fujiki S, Sato K, Honma T, Uchida N, Fukami T, Okazaki Y, Ohara O, Shultz L, Yamada M, Taniguchi S, Vyas P, deHoon M, Momozawa Y, Ishikawa F,
  "Combined inhibition of XIAP and BCL2 drives maximal therapeutic efficacy in genetically diverse aggressive acute myeloid leukemia"
  Nature Cancer 2,340–356 (2021) https://doi.org/10.1038/s43018-021-00177-w
• 5. Grapotte M, Saraswat M, Bessière C, Menichelli C, Ramilowski J, Severin J, Hayashizaki Y, Itoh M, Tagami M, Murata M, Kojima-Ishiyama M, Noma S, Noguchi S, Kasukawa T, Hasegawa A, Suzuki H, Nishiyori-Sueki H, C.Frith M, FANTOM consortium, Chatelain C, Carninci P, deHoon M, W.Wasserman W, Bréhélin L, Lecellier C,
  "Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network"
  Nat Commun. 12(1)3297(2021) doi: 10.1038/s41467-021-23143-7.
• 6. Ducoli L,Agrawal S,Hon C, Ramilowski J,Sibler E, Tagami M, Itoh M, Kondo N, Abugessaisa I, Hasegawa A, Kasukawa T, Suzuki H, Carninci P, Shin J, J.L.deHoon M, Detmar M,
  "The choice of negative control antisense oligonucleotides dramatically impacts downstream analysis depending on the cellular background"
  BMC Genomic Data 22,33 (2021) doi:10.1186/s12863-021-00992-1.
• 7. *Saito K, Zhang Q, Yang H, Yamatani K, Ai T, Ruvolo V, Baran N, Cai T, Ma H, Jacamo R, Kuruvilla V, Imoto J, Kinjo S, Ikeo K, Moriya K, Suzuki K, Miida T, Kim Y-M, Vellano C P, Andreeff M, Marszalek J R, Tabe Y, Konopleva M,
  "Exogenous mitochondrial transfer and endogenous mitochondrial fission facilitate AML resistance to OxPhos inhibition"
  Blood Adv. 5(20)4233-4255(2021) doi: 10.1182/bloodadvances.2020003661.
• 8. Ito Y, Terao Y, Noma S, Tagami M, Yoshida E, Hayashizaki Y, Itoh M, Kawaji H,
  "Nanopore sequencing reveals TACC2 locus complexity and diversity of isoforms transcribed from an intronic promoter"
  Sci Rep,11,9355(2021) doi: 10.1038/s41598-021-88018-9
• 9. *Yamamura Y, Furuichi K, Murakawa Y, Hirabayashi S, Yoshihara M, Sako K, Kitajima S, Toyama T, Iwata Y, Sakai N, Hosomichi K, Murphy P.M, Tajima A, Okita K, Osafune K, Kaneko S, Wada T,
  "Identification of candidate PAX2-regulated genes implicated in human kidney development"
  Sci Rep, 11, 9123(2021) doi: 10.1038/s41598-021-88743-1
• 10. Yasuoka Y, Matsumoto M, Yagi K, Okazaki Y
  "Evolutionary History of GLIS genes illuminates their Roles in Cell Reprogramming and Ciliogenesis"
  Mol Biol Evol.37(1),100-109(2020) doi: 10.1093/molbev/msz205.

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