Research Summary

Selected Publications

• 1. Nishio J, Sato H, Watanabe E, Masuoka H, Aoki K, Kawazoe M, Wakiya R, Yamada S, Muraoka S, Masuoka S, Hayashi T, Mizutani S, Yamada Z, Koshiba K, Irita I, Kanaji M, Furukawa K, Yajima N, Dobashi H, Hirose W, Ishii Y, Suda W, Nanki T.:
  "Associations of gut microbiota with disease development, disease activity, and therapeutic effects in patients with systemic lupus erythematosus."
  Sci Rep. 14(1):32076. (2024)
• 2. Takewaki D, Kiguchi Y, Masuoka H, Manu MS, Raveney BJE, Narushima S, Kurokawa R, Ogata Y, Kimura Y, Sato N, Ozawa Y, Yagishita S, Araki T, Miyake S, Sato W, Suda W, Yamamura T.:
  "Tyzzerella nexilis strains enriched in mobile genetic elements are involved in progressive multiple sclerosis."
  Cell Rep. 43(10):114785. (2024)
• 3. Furuichi M, Kawaguchi T, Pust MM, Yasuma-Mitobe K, Plichta DR, Hasegawa N, Ohya T, Bhattarai SK, Sasajima S, Aoto Y, Tuganbaev T, Yaginuma M, Ueda M, Okahashi N, Amafuji K, Kiridoshi Y, Sugita K, Stražar M, Avila-Pacheco J, Pierce K, Clish CB, Skelly AN, Hattori M, Nakamoto N, Caballero S, Norman JM, Olle B, Tanoue T, Suda W, Arita M, Bucci V, Atarashi K, Xavier RJ, Honda K.:
  "Commensal consortia decolonize Enterobacteriaceae via ecological control."
  Nature. 633(8031):878-886. (2024)
• 4. Kurokawa R, Masuoka H, Takayasu L, Kiguchi Y, Ogata Y, Miura-Kawatsu R, Hattori M, Suda W.:
  "Recovery of microbial DNA by agar-containing solution from extremely low-biomass specimens including skin."
  Sci Rep. 13(1):19666. (2023)
• 5. Takeuchi T, Kubota T, Nakanishi Y, Tsugawa H, Suda W, Kwon AT, Yazaki J, Ikeda K, Nemoto S, Mochizuki Y, Kitami T, Yugi K, Mizuno Y, Yamamichi N, Yamazaki T, Takamoto I, Kubota N, Kadowaki T, Arner E, Carninci P, Ohara O, Arita M, Hattori M, Koyasu S, Ohno H.:
  "Gut microbial carbohydrate metabolism contributes to insulin resistance."
  Nature. 621(7978):389-395. (2023)
• 6. Aiyoshi T, Kakihara T, Watanabe E, Tanaka N, Ogata Y, Masuoka H, Kurokawa R, Fujishiro J, Masumoto K, Suda W.:
  "A comprehensive microbial analysis of pediatric patients with acute appendicitis."
  J Microbiol Immunol Infect. 56(4):695-704. (2023)
• 7. Li Y, Watanabe E, Kawashima Y, Plichta DR, Wang Z, Ujike M, Ang QY, Wu R, Furuichi M, Takeshita K, Yoshida K, Nishiyama K, Kearney SM, Suda W, Hattori M, Sasajima S, Matsunaga T, Zhang X, Watanabe K, Fujishiro J, Norman JM, Olle B, Matsuyama S, Namkoong H, Uwamino Y, Ishii M, Fukunaga K, Hasegawa N, Ohara O, Xavier RJ, Atarashi K, Honda K.:
  "Identification of trypsin-degrading commensals in the large intestine."
  Nature. 609(7927):582-589. (2022)
• 8. Sato Y, Atarashi K, Plichta DR, Arai Y, Sasajima S, Kearney SM, Suda W, Takeshita K, Sasaki T, Okamoto S, Skelly AN, Okamura Y, Vlamakis H, Li Y, Tanoue T, Takei H, Nittono H, Narushima S, Irie J, Itoh H, Moriya K, Sugiura Y, Suematsu M, Moritoki N, Shibata S, Littman DR, Fischbach MA, Uwamino Y, Inoue T, Honda A, Hattori M, Murai T, Xavier RJ, Hirose N, Honda K.:
  "Novel bile acid biosynthetic pathways are enriched in the microbiome of centenarians."
  Nature. 599(7885):458-464. (2021)
• 9. Kiguchi Y, Nishijima S, Kumar N, Hattori M, Suda W.:
  "Long-read metagenomics of multiple displacement amplified DNA of low-biomass human gut phageomes by SACRA pre-processing chimeric reads."
  DNA Res. 28(6):dsab019. (2021)
• 10. Miyauchi E, Kim SW, Suda W, Kawasumi M, Onawa S, Taguchi-Atarashi N, Morita H, Taylor TD, Hattori M, Ohno H.:
  "Gut microorganisms act together to exacerbate inflammation in spinal cords."
  Nature. 585(7823):102-106. (2020)

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