Research Summary

Selected Publications

• 1. Miyamoto H, Shigeta K, Suda W, Ichihashi Y, Nihei N, Matsuura M, Tsuboi A, Tominaga N, Aono M, Sato M, Taguchi S, Nakaguma T, Tsuji N, Ishii C, Matsushita T, Shindo C, Ito T, Kato T, Kurotani A, Shima H, Moriya S, Wada S, Horiuchi S, Satoh T, Mori K, Nishiuchi T, Miyamoto H, Kodama H, Hattori M, Ohno H, Kikuchi J, Yokota Hirai M.:
  "An agroecological structure model of compost – soil - plant interactions for sustainable organic farming"
  ISME COMMUN. 3, 28 (2023)
• 2. Fujiwara F, Miyazawa K, Nihei N, Ichihashi Y.:
  "Agroecosystem Engineering Extended from Plant-Microbe Interactions Revealed by Multi-Omics Data"
  Bioscience, Biotechnology, and Biochemistry 87(1), 21-27 (2023)
• 3. Dang T, Kumaishi K, Usui E, Kobori S, Sato T, Toda Y, Yamasaki Y, Tsujimoto H, Ichihashi Y, Iwata H.:
  "Stochastic variational variable selection for high-dimensional microbiome data"
  Microbiome 10(1), 236 (2022)
• 4. Kumaishi K, Usui E, Suzuki K, Kobori S, Sato T, Toda Y, Takanashi H, Shinozaki S, Noda M, Takakura A, Matsumoto K, Yamasaki Y, Tsujimoto H, Iwata H, Ichihashi Y.:
  "High throughput method of 16S rRNA gene sequencing library preparation for plant root microbial community profiling"
  Sci. Rep. 12, 19289 (2022)
• 5. Choi SW, Kumaishi K, Motohashi R, Enoki H, Chacuttayapong W, Takamizo T, Saika H, Endo E, Yamada T, Hirose A, Koizuka N, Kimura S, Kawakatsu Y, Koga H, Ito E, Shirasu K, Ichihashi Y.:
  "Oxicam-type nonsteroidal anti-inflammatory drugs enhance Agrobacterium-mediated transient transformation in plants"
  Plant Biotechnology 39(3), 323-327 (2022)
• 6. Fujii T, Minami M, Watanabe T, Sato Takumi Kumaishi K, Ichihashi Y.:
  "Characterization of inter-annual changes in soil microbial lora of Panax ginseng cultivation fields in Shimane Prefecture of Western Japan by DNA metabarcoding using next-generation sequencing"
  J. Nat. Med. 75, 1067–1079 (2021)
• 7. Ichihashi Y, Date Y, Shino A, Shimizu T, Shibata A, Kumaishi K, Funahashi F, Wakayama K, Yamazaki K, Umezawa A, Sato T, Kobayashi M, Kamimura M, Kusano M, Che F-S, O`Brien M, Tanoi K, Hayashi M, Nakamura R, Shirasu K, Kikuchi J, Nihei N.:
  "Multi-omics analysis on an agroecosystem reveals the significant role of organic nitrogen to increase agricultural crop yield"
  Proc. Natl. Acad. Sci. USA. 117(25), 14552-14560 (2020)
• 8. Notaguchi M, Kurotani K, Sato Y, Tabata R, Kawakatsu Y, Okayasu K, Sawai Y, Okada R, Asahina M, Ichihashi Y, Shirasu K, Suzuki T, Niwa M, Higashiyama T.:
  "Cell–cell adhesion in plant grafting is facilitated by β-1,4-glucanases"
  Science 369(6504), 698-702 (2020)
• 9. Toju H, Peay KG, Yamamichi M, Narisawa K, Hiruma K, Naito K, Fukuda S, Ushio M, Nakaoka S, Onoda Y, Yoshida K, Schlaeppi K, Bai Y, Sugiura R, Ichihashi Y, Minamisawa K, Kiers ET.:
  "Core microbiomes for sustainable agroecosystems"
  Nat. Plants 4, 247-257 (2018)
• 10. Ichihashi Y, Fukushima A, Shibata A, Shirasu K.:
  "High Impact Gene Discovery: Simple Strand-Specific mRNA Library Construction and Differential Regulatory Analysis Based on Gene Co-Expression Network"
  Methods Mol. Biol. 1830, 163-189 (2018)

Recent Research Results

• 

  Jun. 9, 2020
  Using multiomics in an agricultural field, scientists discover that organic nitrogen plays a key role in plant growth

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