6月19日-6月25日

Published Research Papers of RIKEN Researchers
total number of papers: 59

• How do plants reprogramme the fate of differentiated cells?
  Author(s): Morinaka, Hatsune; Sakamoto, Yuki; Iwase, Akira; Sugimoto, Keiko
  Source: CURRENT OPINION IN PLANT BIOLOGY,74: AUG, 2023
  DOI: 10.1016/j.pbi.2023.102377
• Investigating the applicability of the CYP102A1-decoy-molecule system to other members of the CYP102A subfamily
  Author(s): Stanfield, Joshua Kyle; Onoda, Hiroki; Ariyasu, Shinya; Kasai, Chie; Burfoot, Eleanor Mary; Sugimoto, Hiroshi; et al.
  Source: JOURNAL OF INORGANIC BIOCHEMISTRY,245: AUG, 2023
  DOI: 10.1016/j.jinorgbio.2023.112235
• Attenuation of OX40 signaling suppression by age disrupts peripheral deletion of CD4(+) T cells specific for the epidermal autoantigen desmoglein 3
  Author(s): Iriki, Hisato; Mukai, Miho; Asahina, Yasuhiko; Kubo, Yoko; Ito, Hiromi; Amagai, Masayuki; et al.
  Source: IMMUNITY & AGEING,20(1): JUN 12, 2023
  DOI: 10.1186/s12979-023-00353-9
• Transient formation of multi-phase droplets caused by the addition of a folded protein into complex coacervates with an oppositely charged surface relative to the protein
  Author(s): Sakakibara, Nanako; Ura, Tomoto; Mikawa, Tsutomu; Sugai, Hiroka; Shiraki, Kentaro
  Source: SOFT MATTER: JUN 8, 2023
  DOI: 10.1039/d2sm01422j
• Exopolysaccharide production from glycerol by Bacillus sonorensis NTV10 under thermophilic condition
  Author(s): Vikromvarasiri, Nunthaphan; Nakasaki, Kiyohiko
  Source: BIOMASS CONVERSION AND BIOREFINERY: JUN 2, 2023
  DOI: 10.1007/s13399-023-04402-7
• STRASSE: a silicon tracker for quasi-free scattering measurements at the RIBF
  Author(s): Liu, H. N.; Flavigny, F.; Baba, H.; Boehmer, M.; Bonnes, U.; Borshchov, V.; et al.
  Source: EUROPEAN PHYSICAL JOURNAL A,59(6): JUN 1, 2023
  DOI: 10.1140/epja/s10050-023-01018-3
• Cell density-dependent membrane distribution of ganglioside GM3 in melanoma cells
  Author(s): Murate, Motohide; Yokoyama, Noriko; Tomishige, Nario; Richert, Ludovic; Humbert, Nicolas; Pollet, Brigitte; et al.
  Source: CELLULAR AND MOLECULAR LIFE SCIENCES,80(6): JUN, 2023
  DOI: 10.1007/s00018-023-04813-9
• Behavioral and neural underpinnings of empathic characteristics in a Humanitude-care expert
  Author(s): Sato, Wataru; Nakazawa, Atsushi; Yoshikawa, Sakiko; Kochiyama, Takanori; Honda, Miwako; Gineste, Yves
  Source: FRONTIERS IN MEDICINE,10: MAY 25, 2023
  DOI: 10.3389/fmed.2023.1059203
• Anisotropic spin-current spectroscopy of ferromagnetic superconducting gap symmetries
  Author(s): Funaki, Hiroshi; Yamakage, Ai; Matsuo, Mamoru
  Source: PHYSICAL REVIEW B,107(18): MAY 19, 2023
  DOI: 10.1103/PhysRevB.107.184437
• Bioinertization of NanoLC/MS/MS Systems by Depleting Metal Ions From the Mobile Phases for Phosphoproteomics
  Author(s): Komori, Yumi; Niinae, Tomoya; Imami, Koshi; Yanagibayashi, Jun; Yasunaga, Kenichi; Imamura, Shinya; et al.
  Source: MOLECULAR & CELLULAR PROTEOMICS,22(5): MAY, 2023
  DOI: 10.1016/j.mcpro.2023.100535
• Estimating Density Models with Truncation Boundaries using Score Matching
  Author(s): Liu, Song; Kanamori, Takafumi; Williams, Daniel J.
  Source: JOURNAL OF MACHINE LEARNING RESEARCH,23: , 2022
  
• More Powerful Conditional Selective Inference for Generalized Lasso by Parametric Programming
  Author(s): Duy, Vo Nguyen Le; Takeuchi, Ichiro
  Source: JOURNAL OF MACHINE LEARNING RESEARCH,23: , 2022
  
• Toward Understanding Convolutional Neural Networks from Volterra Convolution Perspective
  Author(s): Li, Tenghui; Zhou, Guoxu; Qiu, Yuning; Zhao, Qibin
  Source: JOURNAL OF MACHINE LEARNING RESEARCH,23: , 2022
  
• Learning from Noisy Pairwise Similarity and Unlabeled Data
  Author(s): Wu, Songhua; Liu, Tongliang; Han, Bo; Yu, Jun; Niu, Gang; Sugiyama, Masashi
  Source: JOURNAL OF MACHINE LEARNING RESEARCH,23: , 2022
  
• Long-read sequencing revealing intragenic deletions in exome-negative spastic paraplegias
  Author(s): Fukuda, Hiromi; Mizuguchi, Takeshi; Doi, Hiroshi; Kameyama, Shinichi; Kunii, Misako; Joki, Hideto; et al.
  Source: JOURNAL OF HUMAN GENETICS: JUN 12, 2023
  DOI: 10.1038/s10038-023-01170-0
• Coexistence of Both Localized Electronic States and Electron Gas at Rutile TiO2 Surfaces
  Author(s): Shen, Shengchun; Wang, Meng; Zhang, Yang; Lyu, Yingjie; Tian, Di; Gao, Chang; et al.
  Source: ADVANCED MATERIALS: JUN 11, 2023
  DOI: 10.1002/adma.202301453
• Blastopore gating mechanism to regulate extracellular fluid excretion
  Author(s): Kato, Soichiro; Inomata, Hidehiko
  Source: ISCIENCE,26(5): MAY 19, 2023
  DOI: 10.1016/j.isci.2023.106585
• Plausible presence of new state in neutron stars with masses above 0.98M(TOV)
  Author(s): Han, Ming-Zhe; Huang, Yong-Jia; Tang, Shao-Peng; Fan, Yi-Zhong
  Source: SCIENCE BULLETIN,68(9): MAY 15, 2023
  DOI: 10.1016/j.scib.2023.04.007
• Breaking Down the Magnonic Wiedemann-Franz Law in the Hydrodynamic Regime
  Author(s): Sano, Ryotaro; Matsuo, Mamoru
  Source: PHYSICAL REVIEW LETTERS,130(16): APR 21, 2023
  DOI: 10.1103/PhysRevLett.130.166201
• Synthetic symbiosis between a cyanobacterium and a ciliate toward novel chloroplast-like endosymbiosis
  Author(s): Azuma, Yuki; Tsuru, Saburo; Habuchi, Masumi; Takami, Risa; Takano, Sotaro; Yamamoto, Kayo; et al.
  Source: SCIENTIFIC REPORTS,13(1): APR 13, 2023
  DOI: 10.1038/s41598-023-33321-w
• Measurements of second-harmonic Fourier coefficients from azimuthal anisotropies in p plus p, p plus Au, d + Au, and 3He+Au collisions at root sNN=200 GeV
  Author(s): Abdulameer, N. J.; Acharya, U.; Adare, A.; Aidala, C.; Ajitanand, N. N.; Akiba, Y.; et al.
  Source: PHYSICAL REVIEW C,107(2): FEB 9, 2023
  DOI: 10.1103/PhysRevC.107.024907
• Spin-Lattice and Magnetoelectric Couplings Enhanced by Orbital Degrees of Freedom in Polar Multiferroic Semiconductors
  Author(s): Kocsis, Vilmos; Tokunaga, Yusuke; Room, Toomas; Nagel, Urmas; Fujioka, Jun; Taguchi, Yasujiro; et al.
  Source: PHYSICAL REVIEW LETTERS,130(3): JAN 18, 2023
  DOI: 10.1103/PhysRevLett.130.036801
• Precession measurement of perturbed angular correlation in double-photon emission nuclides with magnetic field for novel RI imaging method
  Author(s): Ueki, Taisei; Uenomachi, Mizuki; Shimazoe, Kenji; Tomita, Hideki; Kamada, Kei; Takahashi, Hiroyuki
  Source: NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION A-ACCELERATORS SPECTROMETERS DETECTORS AND ASSOCIATED EQUIPMENT,1053: AUG, 2023
  DOI: 10.1016/j.nima.2023.168122
• Pathway Complexity in Nanotubular Supramolecular Polymerization: Metal-Organic Nanotubes with a Planar-Chiral Monomer
  Author(s): Zhao, Yingluo; Kawano, Hiroko; Yamagishi, Hiroshi; Otake, Saya; Itoh, Yoshimitsu; Huang, Hubiao; et al.
  Source: JOURNAL OF THE AMERICAN CHEMICAL SOCIETY: JUN 12, 2023
  DOI: 10.1021/jacs.3c03385
• Local pH at Nonionic and Zwitterionic Lipid/Water Interfaces Revealed by Heterodyne-Detected Electronic Sum-Frequency Generation: A Unified View to Predict Interfacial pH of Biomembranes
  Author(s): Kundu, Achintya; Yamaguchi, Shoichi; Tahara, Tahei
  Source: JOURNAL OF PHYSICAL CHEMISTRY B: JUN 12, 2023
  DOI: 10.1021/acs.jpcb.3c02002
• Machine Learning With Data Assimilation and Uncertainty Quantification for Dynamical Systems: A Review
  Author(s): Cheng, Sibo; Quilodran-Casas, Cesar; Ouala, Said; Farchi, Alban; Liu, Che; Tandeo, Pierre; et al.
  Source: IEEE-CAA JOURNAL OF AUTOMATICA SINICA,10(6): JUN, 2023
  DOI: 10.1109/JAS.2023.123537
• Clonal Spreading of Tumor-Infiltrating T Cells Underlies the Robust Antitumor Immune Responses
  Author(s): Aoki, Hiroyasu; Tsunoda, Mikiya; Ogiwara, Haru; Shimizu, Haruka; Abe, Haruka; Ogawa, Tatsuro; et al.
  Source: CANCER IMMUNOLOGY RESEARCH,11(6): JUN, 2023
  DOI: 10.1158/2326-6066.CIR-22-0517
• Exploring a Nuclear-Selective Radioisotope Delivery System for Efficient Targeted Alpha Therapy
  Author(s): Iizuka, Yuki; Manabe, Yoshiyuki; Ooe, Kazuhiro; Toyoshima, Atsushi; Yin, Xiaojie; Haba, Hiromitsu; et al.
  Source: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES,24(11): MAY 31, 2023
  DOI: 10.3390/ijms24119593
• Effect of a Heterogeneous Network on the Fracture Behavior of Epoxy Resins
  Author(s): Shundo, Atsuomi; Aoki, Mika; Wang, Pangpang; Hoshino, Taiki; Yamamoto, Satoru; Yamada, Sunao; et al.
  Source: MACROMOLECULES,56(11): MAY 30, 2023
  DOI: 10.1021/acs.macromol.3c00341
• Molecular Identification of UDP-Sugar-Dependent Glycosyltransferase and Acyltransferase Involved in the Phenylethanoid Glycoside Biosynthesis Induced by Methyl Jasmonate in Sesamum indicum L.
  Author(s): Fuji, Yushiro; Uchida, Kai; Akashi, Tomoyoshi; Ohtsuki, Takashi; Matsufuji, Hiroshi; Hirai, Masami Yokota
  Source: PLANT AND CELL PHYSIOLOGY: MAY 26, 2023
  DOI: 10.1093/pcp/pcad053
• Origin of Solvent Stabilization at Superconcentrated Electrolyte/Electrode Interfaces Revealed by Heterodyne-Detected Vibrational Sum Frequency Generation Spectroscopy
  Author(s): Sayama, Atsushi; Nihonyanagi, Satoshi; Ohshima, Yasuhiro; Tahara, Tahei
  Source: JOURNAL OF PHYSICAL CHEMISTRY C,127(22): MAY 23, 2023
  DOI: 10.1021/acs.jpcc.3c01744
• Development of machine learning analyses with graph neural network for the WASA-FRS experiment
  Author(s): Ekawa, H.; Dou, W.; Gao, Y.; He, Y.; Kasagi, A.; Liu, E.; et al.
  Source: EUROPEAN PHYSICAL JOURNAL A,59(5): MAY 12, 2023
  DOI: 10.1140/epja/s10050-023-01016-5
• FAUST. VII. Detection of a Hot Corino in the Prototypical Warm Carbon-chain Chemistry Source IRAS 15398-3359
  Author(s): Okoda, Yuki; Oya, Yoko; Francis, Logan; Johnstone, Doug; Ceccarelli, Cecilia; Codella, Claudio; et al.
  Source: ASTROPHYSICAL JOURNAL,948(2): MAY 1, 2023
  DOI: 10.3847/1538-4357/acc1e5
• Evaluation of glycated albumin levels in tears and saliva as a marker in patients with diabetes mellitus
  Author(s): Aihara, Masakazu; Jinnouchi, Hideaki; Yoshida, Akira; Ijima, Hiroko; Sakurai, Yoshitaka; Hayashi, Takanori; et al.
  Source: DIABETES RESEARCH AND CLINICAL PRACTICE,199: MAY, 2023
  DOI: 10.1016/j.diabres.2023.110637
• Condensed but liquid-like domain organization of active chromatin regions in living human cells
  Author(s): Nozaki, Tadasu; Shinkai, Soya; Ide, Satoru; Higashi, Koichi; Tamura, Sachiko; Shimazoe, Masa A.; et al.
  Source: SCIENCE ADVANCES,9(14): APR 7, 2023
  DOI: 10.1126/sciadv.ade9944
• Investigation of V/III ratio dependencies for optimizing AlN growth during reduced parasitic reaction in metalorganic vapor phase epitaxy
  Author(s): Tomita, Atsushi; Miyagawa, Takumi; Hirayama, Hideki; Takashima, Yuusuke; Naoi, Yoshiki; Nagamatsu, Kentaro
  Source: SCIENTIFIC REPORTS,13(1): FEB 27, 2023
  DOI: 10.1038/s41598-023-30489-z
• Formation of extramembrane fl-strands controls dimerization of transmembrane helices in amyloid precursor protein C99
  Author(s): Pantelopulos, George A.; Matsuoka, Daisuke; Hutchison, James M.; Sanders, Charles R.; Sugita, Yuji; Straub, John E.; et al.
  Source: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,119(52): DEC 27, 2022
  DOI: 10.1073/pnas.2212207119
• All-dry flip-over stacking of van der Waals junctions of 2D materials using polyvinyl chloride
  Author(s): Onodera, Momoko; Wakafuji, Yusai; Hashimoto, Taketo; Masubuchi, Satoru; Moriya, Rai; Zhang, Yijin; et al.
  Source: SCIENTIFIC REPORTS,12(1): DEC 19, 2022
  DOI: 10.1038/s41598-022-26193-z
• Alterations to parvalbumin-expressing interneuron function and associated network oscillations in the hippocampal-medial prefrontal cortex circuit during natural sleep in App(NL-G-F/NL-G-F) mice
  Author(s): Brady, Erica S.; Griffiths, Jessica; Andrianova, Lilya; Bielska, Monika H.; Saito, Takashi; Saido, Takaomi C.; et al.
  Source: NEUROBIOLOGY OF DISEASE,182: JUN 15, 2023
  DOI: 10.1016/j.nbd.2023.106151
• Targeting transglutaminase 2 mediated exostosin glycosyltransferase 1 signaling in liver cancer stem cells with acyclic retinoid
  Author(s): Qin, Xian-Yang; Furutani, Yutaka; Yonezawa, Kento; Shimizu, Nobutaka; Kato-Murayama, Miyuki; Shirouzu, Mikako; et al.
  Source: CELL DEATH & DISEASE,14(6): JUN 13, 2023
  DOI: 10.1038/s41419-023-05847-4
• Improved genetic prediction of the risk of knee osteoarthritis using the risk factor-based polygenic score
  Author(s): Morita, Yugo; Kamatani, Yoichiro; Ito, Hiromu; Ikegawa, Shiro; Kawaguchi, Takahisa; Kawaguchi, Shuji; et al.
  Source: ARTHRITIS RESEARCH & THERAPY,25(1): JUN 12, 2023
  DOI: 10.1186/s13075-023-03082-y
• Nuclear many-body effects on particle emission following muon capture on Si-28 and Ca-40
  Author(s): Minato, Futoshi; Naito, Tomoya; Iwamoto, Osamu
  Source: PHYSICAL REVIEW C,107(5): MAY 31, 2023
  DOI: 10.1103/PhysRevC.107.054314
• Environmental Degradation of Nylon, Poly(ethylene terephthalate) (PET), and Poly(vinylidene fluoride) (PVDF) Fishing Line Fibers
  Author(s): An, Yingjun; Kajiwara, Tomoko; Padermshoke, Adchara; Nguyen, Thinh Van; Feng, Sinan; Mokudai, Haruki; et al.
  Source: ACS APPLIED POLYMER MATERIALS,5(6): MAY 19, 2023
  DOI: 10.1021/acsapm.3c00552
• Intertwining of Magnetism and Charge Ordering in Kagome FeGe
  Author(s): Shao, Sen; Yin, Jia-Xin; Belopolski, Ilya; You, Jing-Yang; Hou, Tao; Chen, Hongyu; et al.
  Source: ACS NANO,17(11): MAY 15, 2023
  DOI: 10.1021/acsnano.3c00229
• Structural evidence for intermediates during O-2 formation in photosystem II
  Author(s): Bhowmick, Asmit; Hussein, Rana; Bogacz, Isabel; Simon, Philipp S.; Ibrahim, Mohamed; Chatterjee, Ruchira; et al.
  Source: NATURE: MAY 3, 2023
  DOI: 10.1038/s41586-023-06038-z
• Figure correction of a Wolter mirror master mandrel by organic abrasive machining
  Author(s): Egawa, Satoru; Matsuzawa, Yusuke; Hiraguri, Kentaro; Motoyama, Hiroto; Yamaguchi, Gota; Yokomae, Shunya; et al.
  Source: REVIEW OF SCIENTIFIC INSTRUMENTS,94(5): MAY 1, 2023
  DOI: 10.1063/5.0145122
• Thermodynamic determination of the equilibrium first-order phase-transition line hidden by hysteresis in a phase diagram
  Author(s): Matsuura, Keisuke; Nishizawa, Yo; Kriener, Markus; Kurumaji, Takashi; Oike, Hiroshi; Tokura, Yoshinori; et al.
  Source: SCIENTIFIC REPORTS,13(1): APR 27, 2023
  DOI: 10.1038/s41598-023-33816-6
• Impact of respiratory bacterial infections on mortality in Japanese patients with COVID-19: a retrospective cohort study
  Author(s): Nakagawara, Kensuke; Kamata, Hirofumi; Chubachi, Shotaro; Namkoong, Ho; Tanaka, Hiromu; Lee, Ho; et al.
  Source: BMC PULMONARY MEDICINE,23(1): APR 26, 2023
  DOI: 10.1186/s12890-023-02418-3
• Majorana's approach to nonadiabatic transitions validates the adiabatic-impulse approximation
  Author(s): Kofman, P. O.; Ivakhnenko, O. V.; Shevchenko, S. N.; Nori, Franco
  Source: SCIENTIFIC REPORTS,13(1): MAR 28, 2023
  DOI: 10.1038/s41598-023-31084-y
• Ultrafast structural changes direct the first molecular events of vision
  Author(s): Gruhl, Thomas; Weinert, Tobias; Rodrigues, Matthew J.; Milne, Christopher J.; Ortolani, Giorgia; Nass, Karol; et al.
  Source: NATURE: MAR 22, 2023
  DOI: 10.1038/s41586-023-05863-6
• Monitoring mitochondrial translation by pulse SILAC
  Author(s): Imami, Koshi; Selbach, Matthias; Ishihama, Yasushi
  Source: JOURNAL OF BIOLOGICAL CHEMISTRY,299(2): FEB, 2023
  DOI: 10.1016/j.jbc.2022.102865
• GAD65 deficient mice are susceptible to ethanol-induced impairment of motor coordination and facilitation of cerebellar neuronal firing
  Author(s): Matsunaga, Wataru; Shinoe, Toru; Hirono, Moritoshi
  Source: PLOS ONE,18(5): MAY 22, 2023
  DOI: 10.1371/journal.pone.0286031
• Dephosphorylation of neural wiring protein shootin1 by PP1 phosphatase regulates netrin-1-induced axon guidance
  Author(s): Kastian, Ria Fajarwati; Baba, Kentarou; Kaewkascholkul, Napol; Sasaki, Hisashi; Watanabe, Rikiya; Toriyama, Michinori; et al.
  Source: JOURNAL OF BIOLOGICAL CHEMISTRY,299(5): MAY, 2023
  DOI: 10.1016/j.jbc.2023.104687
• On quantum information before the Page time
  Author(s): Kudler-Flam, Jonah; Kusuki, Yuya
  Source: JOURNAL OF HIGH ENERGY PHYSICS(5): MAY 9, 2023
  DOI: 10.1007/JHEP05(2023)078
• Decision Boundary-Aware Data Augmentation for Adversarial Training
  Author(s): Chen, Chen; Zhang, Jingfeng; Xu, Xilie; Lyu, Lingjuan; Chen, Chaochao; Hu, Tianlei; et al.
  Source: IEEE TRANSACTIONS ON DEPENDABLE AND SECURE COMPUTING,20(3): MAY-JUN, 2023
  DOI: 10.1109/TDSC.2022.3165889
• High-energy molecular-frame photoelectron angular distributions: a molecular bond-length ruler
  Author(s): Vela-Perez, I.; Ota, F.; Mhamdi, A.; Tamura, Y.; Rist, J.; Melzer, N.; et al.
  Source: PHYSICAL CHEMISTRY CHEMICAL PHYSICS: APR 17, 2023
  DOI: 10.1039/d2cp05942h
• Epoxidized graphene grid for highly efficient high-resolution cryoEM structural analysis
  Author(s): Fujita, Junso; Makino, Fumiaki; Asahara, Haruyasu; Moriguchi, Maiko; Kumano, Shota; Anzai, Itsuki; et al.
  Source: SCIENTIFIC REPORTS,13(1): FEB 8, 2023
  DOI: 10.1038/s41598-023-29396-0
• Isoform requirement of clustered protocadherin for preventing neuronal apoptosis and neonatal lethality
  Author(s): Kobayashi, Hiroaki; Takemoto, Kenji; Sanbo, Makoto; Hirabayashi, Masumi; Hirabayashi, Takahiro; Hirayama, Teruyoshi; et al.
  Source: ISCIENCE,26(1): JAN 20, 2023
  DOI: 10.1016/j.isci.2022.105766
• Identifying antibiotics based on structural differences in the conserved allostery from mitochondrial heme-copper oxidases
  Author(s): Nishida, Yuya; Yanagisawa, Sachiko; Morita, Rikuri; Shigematsu, Hideki; Shinzawa-Itoh, Kyoko; Yuki, Hitomi; et al.
  Source: NATURE COMMUNICATIONS,13(1): DEC 8, 2022
  DOI: 10.1038/s41467-022-34771-y