11月11日-11月17日

Published Research Papers of RIKEN Researchers
total number of papers: 56

• Tyzzerella nexilis strains enriched in mobile genetic elements are involved in progressive multiple sclerosis
  Author(s): Takewaki, Daiki; Kiguchi, Yuya; Masuoka, Hiroaki; Manu, Mallahalli S.; Raveney, Ben J. E.; Narushima, Seiko; et al.
  Source: CELL REPORTS,43(10): OCT 22, 2024
  DOI: 10.1016/j.celrep.2024.114785
• Invariant and Equivariant Reynolds Networks
  Author(s): Sannai, Akiyoshi Sannai; Kawano, Makoto; Kumagai, Wataru
  Source: JOURNAL OF MACHINE LEARNING RESEARCH,25: , 2024
  
• AnoOnly: Semi-supervised anomaly detection with the only loss on anomalies
  Author(s): Zhou, Yixuan; Yang, Peiyu; Qu, Yi; Xu, Xing; Sun, Zhe; Cichocki, Andrzej
  Source: EXPERT SYSTEMS WITH APPLICATIONS,262: MAR 1, 2025
  DOI: 10.1016/j.eswa.2024.125597
• Technology roadmap toward the completion of whole-brain architecture with BRA-driven development
  Author(s): Yamakawa, Hiroshi; Tawatsuji, Yoshimasa; Ashihara, Yuta; Fukawa, Ayako; Arakawa, Naoya; Takahashi, Koichi; et al.
  Source: COGNITIVE SYSTEMS RESEARCH,88: DEC, 2024
  DOI: 10.1016/j.cogsys.2024.101300
• Development of a low energy loss micro-channel plate based position-sensitive detector for the Rare Radio-Isotope Ring
  Author(s): Hudson-Chang, G.; Naimi, S.; Abe, Y.; Crane, R.; Li, H. F.; Moriguchi, T.; et al.
  Source: NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION A-ACCELERATORS SPECTROMETERS DETECTORS AND ASSOCIATED EQUIPMENT,1069: DEC, 2024
  DOI: 10.1016/j.nima.2024.169980
• Speed limits to fluctuation dynamics
  Author(s): Hamazaki, Ryusuke
  Source: COMMUNICATIONS PHYSICS,7(1): NOV 6, 2024
  DOI: 10.1038/s42005-024-01851-y
• Determination of molecular arrangement in extremely uniaxial solid thin films of a linear bisazo dye
  Author(s): Yu, Jian; Aoyama, Tetsuya; Adachi, Kiyohiro; Muranaka, Atsuya; Ishitobi, Masamitsu; Umezawa, Hirohito; et al.
  Source: JAPANESE JOURNAL OF APPLIED PHYSICS,63(11): NOV 1, 2024
  DOI: 10.35848/1347-4065/ad85ec
• A mutant BCL11B-N440K protein interferes with BCL11A function during T lymphocyte and neuronal development
  Author(s): Okuyama, Kazuki; Yamashita, Motoi; Koumoundourou, Artemis; Wiegreffe, Christoph; Ohno-Oishi, Michiko; Murphy, Samuel J. H.; et al.
  Source: NATURE IMMUNOLOGY: NOV 1, 2024
  DOI: 10.1038/s41590-024-01997-5
• Denitrogenative Ring-Contraction of Pyridines to a Cyclopentadienyl Skeleton at a Dititanium Hydride Framework
  Author(s): Zhou, Xiaoxi; Zhuo, Qingde; Shima, Takanori; Kang, Xiaohui; Hou, Zhaomin
  Source: JOURNAL OF THE AMERICAN CHEMICAL SOCIETY: OCT 31, 2024
  DOI: 10.1021/jacs.4c13439
• The Parameter Investigation of Electrical Impedance Cytometry for Droplet Measurement
  Author(s): Liu, Xun; Zhang, Tianlong; Tang, Tao; Yuan, Yapeng; Ma, Doudou; Yang, Yang; et al.
  Source: IEEE SENSORS JOURNAL,24(19): OCT 1, 2024
  DOI: 10.1109/JSEN.2024.3446991
• Optical conductivity of the Majorana mode at the s- and d-wave topological superconductor edge
  Author(s): Kamra, Lina Johnsen; Lu, Bo; Linder, Jacob; Tanaka, Yukio; Nagaosa, Naoto
  Source: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,121(40): OCT 1, 2024
  DOI: 10.1073/pnas.2404009121
• One-step N-Terminomics Based on Isolation of Protein N-Terminal Peptides From LysargiNase Digests by Tip-Based Strong Cation Exchange Chromatography
  Author(s): Morikawa, Kazuya; Nishida, Hiroshi; Imami, Koshi; Ishihama, Yasushi
  Source: MOLECULAR & CELLULAR PROTEOMICS,23(9): SEP, 2024
  DOI: 10.1016/j.mcpro.2024.100820
• Evaluating the Effectiveness of advanced large language models in medical Knowledge: A Comparative study using Japanese national medical examination
  Author(s): Liu, Mingxin; Okuhara, Tsuyoshi; Dai, Zhehao; Huang, Wenbo; Gu, Lin; Okada, Hiroko; et al.
  Source: INTERNATIONAL JOURNAL OF MEDICAL INFORMATICS,193: JAN, 2025
  DOI: 10.1016/j.ijmedinf.2024.105673
• Time-resolved heterodyne-detected electronic sum frequency generation (TR-HD-ESFG) spectroscopy: A new approach to explore interfacial dynamics
  Author(s): Roy, Subhadip; Ahmed, Mohammed; Nihonyanagi, Satoshi; Tahara, Tahei
  Source: JOURNAL OF CHEMICAL PHYSICS,161(17): NOV 7, 2024
  DOI: 10.1063/5.0235176
• Genome-resolved metaproteogenomic and nanosolid characterization of an inactive vent chimney densely colonized by enigmatic DPANN archaea
  Author(s): Takamiya, Hinako; Kouduka, Mariko; Kato, Shingo; Suga, Hiroki; Oura, Masaki; Yokoyama, Tadashi; et al.
  Source: ISME JOURNAL,18(1): NOV 5, 2024
  DOI: 10.1093/ismejo/wrae207
• Novel pharmacologic inhibition of lysine-specific demethylase 1 as a potential therapeutic for glioblastoma
  Author(s): Shinjo, Keiko; Umehara, Takashi; Niwa, Hideaki; Sato, Shin; Katsushima, Keisuke; Sato, Shinya; et al.
  Source: CANCER GENE THERAPY: NOV 5, 2024
  DOI: 10.1038/s41417-024-00847-8
• GCM and gcType in 2024: comprehensive resources for microbial strains and genomic data
  Author(s): Fan, Guomei; Sun, Qinglan; Sun, Yan; Liu, Dongmei; Li, Shiwen; Li, Min; et al.
  Source: NUCLEIC ACIDS RESEARCH: NOV 5, 2024
  DOI: 10.1093/nar/gkae1057
• SSBD: an ecosystem for enhanced sharing and reuse of bioimaging data
  Author(s): Kyoda, Koji; Itoga, Hiroya; Yamagata, Yuki; Fujisawa, Emi; Wang, Fangfang; Miranda-Miranda, Miguel; et al.
  Source: NUCLEIC ACIDS RESEARCH: OCT 31, 2024
  DOI: 10.1093/nar/gkae860
• Autophagy and proteasomes in thymic epithelial cells: essential bulk protein degradation systems for immune homeostasis maintenance
  Author(s): Yamaguchi, Noritaka; Takakura, Yuki; Akiyama, Taishin
  Source: FRONTIERS IN IMMUNOLOGY,15: OCT 25, 2024
  DOI: 10.3389/fimmu.2024.1488020
• An end-to-end calibration of the Mini-EUSO detector in space
  Author(s): Battisti, M.; Bertaina, M.; Parizot, E.; Abrate, M.; Barghini, D.; Belov, A.; et al.
  Source: ASTROPARTICLE PHYSICS,165: FEB, 2025
  DOI: 10.1016/j.astropartphys.2024.103057
• Overlooked dissemination risks of antimicrobial resistance through green tide proliferation
  Author(s): Zhao, Yanhui; Zhang, Jian; Zheng, Yu; Shi, Jingliang; Hu, Zhen; Xie, Huijun; et al.
  Source: WATER RESEARCH,268: JAN 1, 2025
  DOI: 10.1016/j.watres.2024.122714
• Nanoplasma formation and expansion ignited by an intense FEL: a study using pump-probe electron spectroscopy
  Author(s): Niozu, Akinobu; Fukuzawa, Hironobu; Hagiya, Toru; Yamamoto, Akifumi; You, Daehyun; Saito, Shu; et al.
  Source: JOURNAL OF PHYSICS B-ATOMIC MOLECULAR AND OPTICAL PHYSICS,57(23): DEC 13, 2024
  DOI: 10.1088/1361-6455/ad8ab3
• Improved fermentative gamma-aminobutyric acid production from glucose by the inactivation of respiratory chain components NDH-I and Cytbo3 in Escherichia coli
  Author(s): Wakahara, Hiroki; Mizokoshi, Takuya; Yamagami, Kotaro; Fukiya, Satoru; Yokota, Atsushi; Maeda, Tomoya
  Source: JOURNAL OF BIOSCIENCE AND BIOENGINEERING,138(6): DEC, 2024
  DOI: 10.1016/j.jbiosc.2024.08.004
• Flash Communication: High-Pressure Synthesis and Post-synthetic Elimination of N₂ Molecule of the Chromium Dinitrogen Complex, [Cr(PCy₃)₂(CO)₃(N₂)]
  Author(s): Uchida, Kaiji; Kitayama, Taku; Tanaka, Shunya; Adachi, Shuta; Iguchi, Hiroaki; Sakamoto, Ryota; et al.
  Source: ORGANOMETALLICS: NOV 7, 2024
  DOI: 10.1021/acs.organomet.4c00373
• Emergence of mixing-induced polymorphic phase with higher mobility in alkylated layered organic semiconductors
  Author(s): Nikaido, Kiyoshi; Inoue, Satoru; Tsuzuki, Seiji; Kumai, Reiji; Matsui, Hiroyuki; Takaba, Kiyofumi; et al.
  Source: PHYSICAL REVIEW MATERIALS,8(11): NOV 1, 2024
  DOI: 10.1103/PhysRevMaterials.8.115601
• Needs Companion: A Novel Approach to Continuous User Needs Sensing Using Virtual Agents and Large Language Models
  Author(s): Nakata, Takuya; Nakamura, Masahide; Chen, Sinan; Saiki, Sachio
  Source: SENSORS,24(21): NOV, 2024
  DOI: 10.3390/s24216814
• Broadband generation and tomography of non-Gaussian states for ultra-fast optical quantum processors
  Author(s): Kawasaki, Akito; Ide, Ryuhoh; Brunel, Hector; Suzuki, Takumi; Nehra, Rajveer; Nakashima, Katsuki; et al.
  Source: NATURE COMMUNICATIONS,15(1): NOV 1, 2024
  DOI: 10.1038/s41467-024-53408-w
• H3K27 dimethylation dynamics reveal stepwise establishment of facultative heterochromatin in early mouse embryos
  Author(s): Matsuwaka, Masahiro; Kumon, Mami; Inoue, Azusa
  Source: NATURE CELL BIOLOGY: OCT 31, 2024
  DOI: 10.1038/s41556-024-01553-1
• Generalized Langevin dynamics for single beads in linear elastic networks
  Author(s): Shinkai, Soya; Onami, Shuichi; Miyaguchi, Tomoshige
  Source: PHYSICAL REVIEW E,110(4): OCT 23, 2024
  DOI: 10.1103/PhysRevE.110.044136
• PDE4B Missense Variant Increases Susceptibility to Post-traumatic Stress Disorder-Relevant Phenotypes
  Author(s): Lipina, Tatiana, V; Li, Shupeng; Petrova, Ekaterina S.; Amstislavskaya, Tamara G.; Cameron, Ryan T.; Elliott, Christina; et al.
  Source: JOURNAL OF NEUROSCIENCE,44(43): OCT 23, 2024
  DOI: 10.1523/JNEUROSCI.0137-24.2024
• Humans flexibly integrate social information despite interindividual differences in reward
  Author(s): Witt, Alexandra; Toyokawa, Wataru; Lala, Kevin N.; Gaissmaier, Wolfgang; Wu, Charley M.
  Source: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,121(39): SEP 24, 2024
  DOI: 10.1073/pnas.2404928121
• Frank copula is minimum information copula under fixed Kendall's τ
  Author(s): Sukeda, Issey; Sei, Tomonari
  Source: STATISTICS & PROBABILITY LETTERS,217: FEB, 2025
  DOI: 10.1016/j.spl.2024.110289
• A mosaic-type array composed of Si photodiodes for charged-particle detection
  Author(s): Li, J. T.; Imai, N.; Yokoyama, R.; Kojima, R.; Michimasa, S.; Chillery, T.; et al.
  Source: NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION A-ACCELERATORS SPECTROMETERS DETECTORS AND ASSOCIATED EQUIPMENT,1070: JAN, 2025
  DOI: 10.1016/j.nima.2024.170019
• Lifespan estimates for semilinear damped wave equation in a two-dimensional exterior domain
  Author(s): Ikeda, Masahiro; Sobajima, Motohiro; Taniguchi, Koichi; Wakasugi, Yuta
  Source: CALCULUS OF VARIATIONS AND PARTIAL DIFFERENTIAL EQUATIONS,63(9): DEC, 2024
  DOI: 10.1007/s00526-024-02847-w
• A feasibility study of the measurement of kaonic lead X-rays at DANE for the precise determination of the charged kaon mass
  Author(s): Bosnar, D.; Abbene, L.; Amsler, C.; Buttacavoli, A.; Del Grande, R.; Iliescu, M.; et al.
  Source: NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION A-ACCELERATORS SPECTROMETERS DETECTORS AND ASSOCIATED EQUIPMENT,1069: DEC, 2024
  DOI: 10.1016/j.nima.2024.169966
• Reliable and easy-to-use calculating tool for the Nail Psoriasis Severity Index using deep learning
  Author(s): Horikawa, Hiroto; Tanese, Keiji; Nonaka, Naoki; Seita, Jun; Amagai, Masayuki; Saito, Masataka
  Source: NPJ SYSTEMS BIOLOGY AND APPLICATIONS,10(1): NOV 7, 2024
  DOI: 10.1038/s41540-024-00458-x
• Widespread 3′UTR capped RNAs derive from G-rich regions in proximity to AGO2 binding sites
  Author(s): Haberman, Nejc; Digby, Holly; Faraway, Rupert; Cheung, Rebecca; Chakrabarti, Anob M.; Jobbins, Andrew M.; et al.
  Source: BMC BIOLOGY,22(1): NOV 7, 2024
  DOI: 10.1186/s12915-024-02032-7
• All order factorization for virtual Compton scattering at next-to-leading power
  Author(s): Schoenleber, Jakob; Szafron, Robert
  Source: JOURNAL OF HIGH ENERGY PHYSICS(11): NOV 6, 2024
  DOI: 10.1007/JHEP11(2024)031
• Postsynaptic competition between calcineurin and PKA regulates mammalian sleep-wake cycles
  Author(s): Wang, Yimeng; Cao, Siyu; Tone, Daisuke; Fujishima, Hiroshi; Yamada, Rikuhiro G.; Ohno, Rei-ichiro; et al.
  Source: NATURE: NOV 6, 2024
  DOI: 10.1038/s41586-024-08132-2
• CCDC28A deficiency causes head-tail coupling defects and immotility in murine spermatozoa
  Author(s): Stojanovic, Nena; Hernandez, Rosario Ortiz; Ramirez, Nayeli Torres; Martinez, Olga Margarita Echeverria; Hernandez, Abrahan Hernandez; Shibuya, Hiroki
  Source: SCIENTIFIC REPORTS,14(1): NOV 5, 2024
  DOI: 10.1038/s41598-024-78453-9
• Reconsidering nonlinear emergent inductance: Time-varying Joule heating and its impact on AC electrical response
  Author(s): Furuta, Soju; Koshibae, Wataru; Matsuura, Keisuke; Abe, Nobuyuki; Wang, Fei; Zhou, Shuyun; et al.
  Source: PHYSICAL REVIEW B,110(17): NOV 1, 2024
  DOI: 10.1103/PhysRevB.110.174402
• Multiomics analysis identified IL-4-induced IL1RL1high eosinophils characterized by prominent cysteinyl leukotriene metabolism
  Author(s): Sunata, Keeya; Miyata, Jun; Kawashima, Yusuke; Konno, Ryo; Ishikawa, Masaki; Hasegawa, Yoshinori; et al.
  Source: JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY,154(5): NOV, 2024
  DOI: 10.1016/j.jaci.2024.07.012
• Transient energy dissipation at the Fermi velocity in a magnetocaloric metal
  Author(s): Chen, Yanna; Zhang, Zhao; Zhang, Zhe; Zhou, Houbo; Yan, Xuexi; Sun, Tao; et al.
  Source: PHYSICAL REVIEW B,110(13): OCT 31, 2024
  DOI: 10.1103/PhysRevB.110.134323
• Investigation of direct nuclear reactions in a storage ring using in-ring detection
  Author(s): Zamora, J. C.; Aumann, T.; Bagchi, S.; Bishop, S.; Bo, M.; Boenig, S.; et al.
  Source: PHYSICAL REVIEW C,110(4): OCT 30, 2024
  DOI: 10.1103/PhysRevC.110.044614
• Causal-learn: Causal Discovery in Python
  Author(s): Zheng, Yujia; Huang, Biwei; Chen, Wei; Ramsey, Joseph; Gong, Mingming; Cai, Ruichu; et al.
  Source: JOURNAL OF MACHINE LEARNING RESEARCH,25: , 2024
  
• THE ODYSSEY OF KAONIC ATOMS STUDIES AT THE DAΦNE COLLIDER: FROM DEAR TO SIDDHARTA-2
  Author(s): Artibani, F.; Clozza, F.; Bazzi, M.; Capoccia, C.; Clozza, A.; DE Paolis, L.; et al.
  Source: ACTA PHYSICA POLONICA B,55(4): , 2024
  DOI: 10.5506/APhysPolB.55.5-A2
• Generation of human induced pluripotent stem cell lines derived from patients of cystic biliary atresia
  Author(s): Ge, Ningxin; Suzuki, Kan; Sato, Iori; Noguchi, Michiya; Nakamura, Yukio; Matsuo-Takasaki, Mami; et al.
  Source: HUMAN CELL,38(1): NOV 13, 2024
  DOI: 10.1007/s13577-024-01147-x
• Intracellular cAMP signaling-induced Ca²⁺ influx mediated by calcium homeostasis modulator 1 (CALHM1) in human odontoblasts
  Author(s): Kimura, Maki; Nomura, Sachie; Ouchi, Takehito; Kurashima, Ryuya; Nakano, Rei; Sekiya, Hinako; et al.
  Source: PFLUGERS ARCHIV-EUROPEAN JOURNAL OF PHYSIOLOGY: NOV 12, 2024
  DOI: 10.1007/s00424-024-03038-4
• Synergistic involvement of the NZF domains of the LUBAC accessory subunits HOIL-1L and SHARPIN in the regulation of LUBAC function
  Author(s): Toda, Yusuke; Fujita, Hiroaki; Mino, Koshiki; Koyama, Takuto; Matsuoka, Seiji; Kaizuka, Toshie; et al.
  Source: CELL DEATH & DISEASE,15(11): NOV 11, 2024
  DOI: 10.1038/s41419-024-07199-z
• Photoresponsive Adenosine Derivatives for the Optical Control of Adenosine A_2A Receptors in Living Cells
  Author(s): Suzuki, Harufumi; Doura, Tomohiro; Matsuba, Yuya; Matsuoka, Yuma; Araya, Tsuyoshi; Asada, Hidetsugu; et al.
  Source: ACS CHEMICAL BIOLOGY: NOV 11, 2024
  DOI: 10.1021/acschembio.4c00583
• Cross potential selection: a proposal for optimizing crossing combinations in recurrent selection using the usefulness criterion of future inbred lines
  Author(s): Sakurai, Kengo; Hamazaki, Kosuke; Inamori, Minoru; Kaga, Akito; Iwata, Hiroyoshi
  Source: G3-GENES GENOMES GENETICS,14(11): NOV 6, 2024
  DOI: 10.1093/g3journal/jkae224
• Initial tensor construction and dependence of the tensor renormalization group on initial tensors
  Author(s): Nakayama, Katsumasa; Schneider, Manuel
  Source: PHYSICAL REVIEW D,110(9): NOV 4, 2024
  DOI: 10.1103/PhysRevD.110.094501
• Page Type-Aware Full-Sequence Program Scheduling via Reinforcement Learning in High Density SSDs
  Author(s): Li, Jun; Cai, Zhigang; Gerofi, Balazs; Ishikawa, Yutaka; Liao, Jianwei
  Source: IEEE TRANSACTIONS ON COMPUTER-AIDED DESIGN OF INTEGRATED CIRCUITS AND SYSTEMS,43(11): NOV, 2024
  DOI: 10.1109/TCAD.2024.3444718
• BCR, not TCR, repertoire diversity is associated with favorable COVID-19 prognosis
  Author(s): Paran, Faith Jessica; Oyama, Rieko; Khasawneh, Abdullah; Ai, Tomohiko; Ismanto, Hendra Saputra; Sherif, Aalaa Alrahman; et al.
  Source: FRONTIERS IN IMMUNOLOGY,15: OCT 28, 2024
  DOI: 10.3389/fimmu.2024.1405013
• Exact Thermal Eigenstates of Nonintegrable Spin Chains at Infinite Temperature
  Author(s): Chiba, Yuuya; Yoneta, Yasushi
  Source: PHYSICAL REVIEW LETTERS,133(17): OCT 24, 2024
  DOI: 10.1103/PhysRevLett.133.170404
• Improving the sd-shell effective interaction obtained from the Daejeon16 nucleon-nucleon interaction
  Author(s): Shin, Ik Jae; Smirnova, Nadezda A.; Shirokov, Andrey M.; Yang, Zuxing; Barrett, Bruce R.; Li, Zhen; et al.
  Source: PHYSICAL REVIEW C,110(3): SEP 9, 2024
  DOI: 10.1103/PhysRevC.110.034306