1月27日-2月2日

Published Research Papers of RIKEN Researchers
total number of papers: 56

• Engineering of acyl ligase domain in non-ribosomal peptide synthetases to change fatty acid moieties of lipopeptides
  Author(s): Aoki, Rina; Kumagawa, Eri; Kamata, Kazuaki; Ago, Hideo; Sakai, Naoki; Hasunuma, Tomohisa; et al.
  Source: COMMUNICATIONS CHEMISTRY,8(1): JAN 21, 2025
  DOI: 10.1038/s42004-024-01379-w
• Engineering of Silkworm Tyrosyl-tRNA Synthetase Variants to Create Halogenated Silk Fiber with Improved Thermal Stability
  Author(s): Teramoto, Hidetoshi; Amano, Yoshimi; Kojima, Katsura; Iga, Masatoshi; Sakamoto, Kensaku
  Source: BIOMACROMOLECULES: JAN 21, 2025
  DOI: 10.1021/acs.biomac.4c01377
• Exocyst complex component 1 (Exoc1) loss in dormant oocyte disrupts c-KIT and growth differentiation factor (GDF9) subcellular localization and causes female infertility in mice
  Author(s): Nguyen, Chi Lieu Kim; Kuba, Yumeno; Le, Hoai Thu; Shawki, Hossam Hassan; Mikami, Natsuki; Aoki, Madoka; et al.
  Source: CELL DEATH DISCOVERY,11(1): JAN 20, 2025
  DOI: 10.1038/s41420-025-02291-5
• Screening of effective pesticides to control rubber tree leaf fall disease (LFD) caused by Neopestalotiopsis and Colletotrichum fungi in Indonesia
  Author(s): Okubo-Kurihara, Emiko; Febbiyanti, Tri Rapani; Ashari, Firman; Yanagawa, Yuki; Osada, Emi; Kuriyama, Tomoko; et al.
  Source: JOURNAL OF PESTICIDE SCIENCE,49(4): , 2024
  DOI: 10.1584/jpestics.D24-020
• Synthesis of a semimetallic Weyl ferromagnet with point Fermi surface
  Author(s): Belopolski, Ilya; Watanabe, Ryota; Sato, Yuki; Yoshimi, Ryutaro; Kawamura, Minoru; Nagahama, Soma; et al.
  Source: NATURE: JAN 22, 2025
  DOI: 10.1038/s41586-024-08330-y
• Systematic ocular phenotyping of 8,707 knockout mouse lines identifies genes associated with abnormal corneal phenotypes
  Author(s): Vo, Peter; Imai-Leonard, Denise M.; Yang, Benjamin; Briere, Andrew; Shao, Andy; Casanova, M. Isabel; et al.
  Source: BMC GENOMICS,26(1): JAN 20, 2025
  DOI: 10.1186/s12864-025-11222-8
• Nonreciprocal and nonlinear transport and spontaneous voltage generation in MoGe/Ni₈₁Fe₁₉
  Author(s): Oshigane, Koyomi; Arisawa, Hiroki; Saitoh, Eiji
  Source: APPLIED PHYSICS LETTERS,126(2): JAN 13, 2025
  DOI: 10.1063/5.0237520
• Unelongated Stems are an Active Nitrogen-Fixing Site in Rice Stems Supported by Both Sugar and Methane Under Low Nitrogen Conditions
  Author(s): Okamoto, Takanori; Hotta, Yukina; Shinjo, Rina; Masuda, Yoko; Nishihara, Arisa; Sasaki, Ryosuke; et al.
  Source: RICE,18(1): DEC, 2025
  DOI: 10.1186/s12284-025-00757-9
• Transformer-based neural marked spatio temporal point process model for analyzing football match events
  Author(s): Yeung, Calvin; Sit, Tony; Fujii, Keisuke
  Source: APPLIED INTELLIGENCE,55(5): APR, 2025
  DOI: 10.1007/s10489-024-05996-9
• Metabolism and metabolites regulating hematopoiesis
  Author(s): Zhang, Baihao; Fagarasan, Sidonia
  Source: CURRENT OPINION IN IMMUNOLOGY,93: APR, 2025
  DOI: 10.1016/j.coi.2025.102525
• Topochemical Transformation from Protonic to Hydride-ionic Phase in BaSn_1-x In _x O_3-0.5x Perovskites
  Author(s): Takahashi, Takuya; Toriumi, Hajime; Kobayashi, Genki; Saito, Takashi; Mori, Kazuhiro; Ariga-Miwa, Hiroko; et al.
  Source: CHEMISTRY OF MATERIALS: JAN 22, 2025
  DOI: 10.1021/acs.chemmater.4c02903
• Investigation of Kaonic Atom Optical Potential by the High-Precision Data of Kaonic ³He and ⁴He Atoms
  Author(s): Yamagata-Sekihara, J.; Iizawa, Y.; Jido, D.; Ikeno, N.; Hashimoto, T.; Okada, S.; et al.
  Source: PROGRESS OF THEORETICAL AND EXPERIMENTAL PHYSICS,2025(1): JAN 22, 2025
  DOI: 10.1093/ptep/ptae189
• Asymmetric projection of introspection reveals a behavioural and neural mechanism for interindividual social coordination
  Author(s): Miyamoto, Kentaro; Harbison, Caroline; Tanaka, Shiho; Saito, Marina; Luo, Shuyi; Matsui, Sara; et al.
  Source: NATURE COMMUNICATIONS,16(1): JAN 20, 2025
  DOI: 10.1038/s41467-024-55202-0
• An android can show the facial expressions of complex emotions
  Author(s): Diel, Alexander; Sato, Wataru; Hsu, Chun-Ting; Baeuerle, Alexander; Teufel, Martin; Minato, Takashi
  Source: SCIENTIFIC REPORTS,15(1): JAN 19, 2025
  DOI: 10.1038/s41598-024-84224-3
• Versatile application of fast green FCF as a visible cholangiogram in adult mice to medium-sized mammals
  Author(s): Niimi, Tomoyuki; Miyazaki, Nanae; Oiki, Hironobu; Uemura, Mami; Zeng, Shihan; Promsut, Watcharapon; et al.
  Source: SCIENTIFIC REPORTS,15(1): JAN 16, 2025
  DOI: 10.1038/s41598-024-84355-7
• The factors that influence protostellar multiplicity: I. Gas temperature, density, and mass in Perseus with Nobeyama
  Author(s): Murillo, N. M.; Fuchs, C. M.; Harsono, D.; Sakai, N.; Hacar, A.; Johnstone, D.; et al.
  Source: ASTRONOMY & ASTROPHYSICS,689: SEP 18, 2024
  DOI: 10.1051/0004-6361/202348096
• Qcforever2: Advanced Automation of Quantum Chemistry Computations
  Author(s): Sumita, Masato; Terayama, Kei; Ishida, Shoichi; Suga, Kensuke; Saito, Shohei; Tsuda, Koji
  Source: JOURNAL OF COMPUTATIONAL CHEMISTRY,46(3): JAN 30, 2025
  DOI: 10.1002/jcc.70017
• Insights and trends review: Use of extended reality (xR) in hand surgery
  Author(s): Oyama, Shintaro; Iwase, Hiroaki; Yoneda, Hidemasa; Yokota, Hideo; Hirata, Hitoshi; Yamamoto, Michiro
  Source: JOURNAL OF HAND SURGERY-EUROPEAN VOLUME: JAN 24, 2025
  DOI: 10.1177/17531934241313208
• Evaluation method for proteoglycans using near-infrared spectroscopy
  Author(s): Nakamura, Fumiya; Ikemizu, Tomoki; Murao, Miu; Isoshima, Takashi; Kobayashi, Daiji; Mitomo, Hideyuki; et al.
  Source: ANALYTICAL SCIENCES: JAN 24, 2025
  DOI: 10.1007/s44211-025-00715-x
• Three-body forces and Efimov physics in nuclei and atoms
  Author(s): Endo, Shimpei; Epelbaum, Evgeny; Naidon, Pascal; Nishida, Yusuke; Sekiguchi, Kimiko; Takahashi, Yoshiro
  Source: EUROPEAN PHYSICAL JOURNAL A,61(1): JAN 22, 2025
  DOI: 10.1140/epja/s10050-024-01467-4
• Frequency-Dependent Vibrational Relaxation Time of OH Stretch at the Air/Isotopically Diluted Water Interface
  Author(s): Kinoshita, Erika; Sung, Woongmo; Nihonyanagi, Satoshi; Okuyama, Hiroshi; Tahara, Tahei
  Source: JOURNAL OF PHYSICAL CHEMISTRY LETTERS: JAN 22, 2025
  DOI: 10.1021/acs.jpclett.4c03223
• Incomplete human reference genomes can drive false sex biases and expose patient-identifying information in metagenomic data
  Author(s): Guccione, Caitlin; Patel, Lucas; Tomofuji, Yoshihiko; Mcdonald, Daniel; Gonzalez, Antonio; Sepich-Poore, Gregory D.; et al.
  Source: NATURE COMMUNICATIONS,16(1): JAN 18, 2025
  DOI: 10.1038/s41467-025-56077-5
• A taxonomic re-evaluation of Hymenostilbe mycetophila, a hyperparasitic synnematous hyphomycete on Favolaschia nipponica, with Kobayasiyomyces mycetophilus gen. et comb. nov. ( Leotiales )
  Author(s): Okada, Gen; Kurokawa, Etsuko; Sugimoto, Izumi; Nishida, Masayuki; Miyai, Masahiko; Kondo, Yoshiaki; et al.
  Source: MYCOSCIENCE,66(1): , 2025
  DOI: 10.47371/mycosci.2024.10.007
• GENI as an AMPK Activator Binds α and γ Subunits and Improves the Memory Dysfunction of Alzheimer's Disease Mouse Models via Autophagy and Neuroprotection
  Author(s): Wang, Ying; Li, Lanjie; Chen, Danni; Shan, Jiaheng; Yi, Meijuan; Osada, Hiroyuki; et al.
  Source: ANTIOXIDANTS,14(1): JAN, 2025
  DOI: 10.3390/antiox14010057
• Snowflake Data Warehouse for Large-Scale and Diverse Biological Data Management and Analysis
  Author(s): Koreeda, Tatsuya; Honda, Hiroshi; Onami, Jun-ichi
  Source: GENES,16(1): JAN, 2025
  DOI: 10.3390/genes16010034
• Metabolite Profiling and Association Analysis of Leaf Tipburn in Heat-Tolerant Bunching Onion Varieties
  Author(s): Nakajima, Tetsuya; Yamamoto, Reina; Matsuse, Kanako; Fuji, Masato; Fujii, Koei; Hirata, Sho; et al.
  Source: PLANTS-BASEL,14(2): JAN, 2025
  DOI: 10.3390/plants14020187
• Water vapor as a probe of the origin of gas in debris disks
  Author(s): Hasegawa, Yasuhiro; Nakatani, Riouhei; Rebollido, Isabel; Macgregor, Meredith; Davidsson, Bjoern J. R.; Lis, Dariusz C.; et al.
  Source: ASTRONOMY & ASTROPHYSICS,692: DEC 17, 2024
  DOI: 10.1051/0004-6361/202452252
• Testability of the quark-hadron transition using gravitational waves from merging binary neutron stars
  Author(s): Harada, Reiko; Cannon, Kipp; Hotokezaka, Kenta; Kyutoku, Koutarou
  Source: PHYSICAL REVIEW D,110(12): DEC 2, 2024
  DOI: 10.1103/PhysRevD.110.123005
• Confined antiskyrmion motion driven by electric current excitations
  Author(s): Guang, Yao; Zhang, Xichao; Liu, Yizhou; Peng, Licong; Yasin, Fehmi Sami; Karube, Kosuke; et al.
  Source: NATURE COMMUNICATIONS,15(1): SEP 3, 2024
  DOI: 10.1038/s41467-024-52072-4
• A singlet-triplet hole-spin qubit in MOS silicon
  Author(s): Liles, S. D.; Halverson, D. J.; Wang, Z.; Shamim, A.; Eggli, R. S.; Jin, I. K.; et al.
  Source: NATURE COMMUNICATIONS,15(1): SEP 3, 2024
  DOI: 10.1038/s41467-024-51902-9
• Demonstration of microwave single-shot quantum key distribution
  Author(s): Fesquet, Florian; Kronowetter, Fabian; Renger, Michael; Yam, Wun Kwan; Gandorfer, Simon; Inomata, Kunihiro; et al.
  Source: NATURE COMMUNICATIONS,15(1): AUG 30, 2024
  DOI: 10.1038/s41467-024-51421-7
• Electric-field-enhanced second-harmonic domain contrast and nonreciprocity in a van der Waals antiferromagnet
  Author(s): Wang, Ziqian; Wang, Meng; Lehmann, Jannis; Shiomi, Yuki; Arima, Taka-hisa; Nagaosa, Naoto; et al.
  Source: NATURE COMMUNICATIONS,15(1): AUG 30, 2024
  DOI: 10.1038/s41467-024-51943-0
• A patient-derived HCC spheroid system to model the tumor microenvironment and treatment response
  Author(s): Crouchet, Emilie; Almeida, Nuno; Durand, Sarah C.; Parnot, Marie; Oudot, Marine A.; Giannone, Fabio; et al.
  Source: JHEP REPORTS,7(2): FEB, 2025
  DOI: 10.1016/j.jhepr.2024.101252
• ENSO and QBO Controls the Favorableness of the MJO Realization Cooperatively
  Author(s): Takasuka, Daisuke; Kohyama, Tsubasa; Suematsu, Tamaki; Miura, Hiroaki
  Source: JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES,130(2): JAN 28, 2025
  DOI: 10.1029/2024JD042116
• RNase T2 deficiency promotes TLR13-dependent replenishment of tissue-protective Kupffer cells
  Author(s): Sato, Ryota; Liu, Kaiwen; Shibata, Takuma; Hoshino, Katsuaki; Yamaguchi, Kiyoshi; Miyazaki, Toru; et al.
  Source: JOURNAL OF EXPERIMENTAL MEDICINE,222(3): JAN 24, 2025
  DOI: 10.1084/jem.20230647
• Rapid access to functionalized nanographenes through a palladium-catalyzed multi-annulation sequence
  Author(s): Maekawa, Takehisa; Itami, Kenichiro
  Source: CHEMICAL SCIENCE: JAN 21, 2025
  DOI: 10.1039/d4sc07995g
• A Fast Algorithm for the Real-Valued Combinatorial Pure Exploration of the Multi-Armed Bandit
  Author(s): Nakamura, Shintaro; Sugiyama, Masashi
  Source: NEURAL COMPUTATION,37(2): JAN 21, 2025
  DOI: 10.1162/neco_a_01728
• 'Ship-in-a-Bottle' Integration of pH-Sensitive 3D Proteinaceous Meshes into Microfluidic Channels
  Author(s): Serien, Daniela; Sugioka, Koji; Narazaki, Aiko
  Source: NANOMATERIALS,15(2): JAN, 2025
  DOI: 10.3390/nano15020104
• DECODE enables high-throughput mapping of antibody epitopes at single amino acid resolution
  Author(s): Matsumoto, Katsuhiko; Harada, Shoko Y.; Yoshida, Shota Y.; Narumi, Ryohei; Mitani, Tomoki T.; Yada, Saori; et al.
  Source: PLOS BIOLOGY,23(1): JAN, 2025
  DOI: 10.1371/journal.pbio.3002707
• Kaonic Atoms with the SIDDHARTA-2 Experiment at DAΦNE
  Author(s): Napolitano, F.; Abbene, L.; Artibani, F.; Bazzi, M.; Borghi, G.; Bosnar, D.; et al.
  Source: ACTA PHYSICA POLONICA A,146(5): NOV, 2024
  DOI: 10.12693/APhysPolA.146.669
• Chiral Symmetry Restoration in Nucleus Observed in Pionic Atoms
  Author(s): Itahashi, K.; Nishi, T.; Ahn, D.; Berg, G. P. A.; Dozono, M.; Etoh, D.; et al.
  Source: ACTA PHYSICA POLONICA A,146(5): NOV, 2024
  DOI: 10.12693/APhysPolA.146.721
• Level 2 standard modules for A₉⁽²⁾ and partition conditions of Kanade-Russell
  Author(s): Ito, Kana
  Source: JOURNAL OF ALGEBRA,667: APR 1, 2025
  DOI: 10.1016/j.jalgebra.2024.11.031
• CCN1 derived from vascular endothelial cells impairs cognitive function in Alzheimer's disease model mice
  Author(s): Hirabayashi, Shuntaro; Uyeda, Akiko; Manabe, Ichiro; Yonezu, Yoshino; Saito, Takashi; Saido, Takaomi C.; et al.
  Source: JOURNAL OF PHARMACOLOGICAL SCIENCES,157(3): MAR, 2025
  DOI: 10.1016/j.jphs.2025.01.004
• Biochemical evidence for the diversity of LHCI proteins in PSI-LHCI from the red alga Galdieria sulphuraria NIES-3638
  Author(s): Nagao, Ryo; Ogawa, Haruya; Suzuki, Takehiro; Dohmae, Naoshi; Kato, Koji; Nakajima, Yoshiki; et al.
  Source: PHOTOSYNTHESIS RESEARCH,163(1): FEB, 2025
  DOI: 10.1007/s11120-024-01134-1
• Simultaneous Ring-Opening and Dehydrogenation of Diarylethene Induced by Tunneling Electrons
  Author(s): Sato, Hirokazu; Lee, Taehwan; Lee, Minhui; Kazuma, Emiko; Kim, Yousoo; Jung, Jaehoon; et al.
  Source: CHEMPHYSCHEM: JAN 28, 2025
  DOI: 10.1002/cphc.202400988
• Expression of spider silk protein in tobacco improves drought tolerance with minimal effects on its mechanotype
  Author(s): Morey-Yagi, Shamitha Rao; Hashida, Yoichi; Okamoto, Masanori; Odahara, Masaki; Suzuki, Takehiro; Thagun, Chonprakun; et al.
  Source: PLANT JOURNAL,121(2): JAN, 2025
  DOI: 10.1111/tpj.17213
• A Structural Model of Truncated Gaussia princeps Luciferase Elucidating the Crucial Catalytic Function of No.76 Arginine towards Coelenterazine Oxidation
  Author(s): Wu, Nan; Xu, Zhi-Chao; Du, Kai-Dong; Huang, Shen; Kobayashi, Naohiro; Kuroda, Yutaka; et al.
  Source: PLOS COMPUTATIONAL BIOLOGY,21(1): JAN, 2025
  DOI: 10.1371/journal.pcbi.1012722
• A Search Using GEO600 for Gravitational Waves Coincident with Fast Radio Bursts from SGR 1935+2154
  Author(s): Abac, A. G.; Abbott, R.; Abouelfettouh, I.; Acernese, F.; Ackley, K.; Adhicary, S.; et al.
  Source: ASTROPHYSICAL JOURNAL,977(2): DEC 20, 2024
  DOI: 10.3847/1538-4357/ad8de0
• Spectroscopy of ⁵²K
  Author(s): Enciu, M.; Obertelli, A.; Doornenbal, P.; Heinz, M.; Miyagi, T.; Nowacki, F.; et al.
  Source: PHYSICAL REVIEW C,110(6): DEC 2, 2024
  DOI: 10.1103/PhysRevC.110.064301
• Investigation of entrance-channel barrier distribution and charged-particle emission in the ⁵¹V+¹⁵⁹Tb reaction
  Author(s): Brionnet, P.; Cap, T.; Forge, M.; Fukatsu, T.; Haba, H.; Kaji, D.; et al.
  Source: PHYSICAL REVIEW C,110(6): DEC 2, 2024
  DOI: 10.1103/PhysRevC.110.064601
• First β-decay spectroscopy of the ₅₂¹³⁹Te₈₇ nucleus and its P_n branching
  Author(s): Lozeva, R.; Si, M.; Naidja, H.; Odahara, A.; Moon, C. -B.; Nishimura, S.; et al.
  Source: PHYSICAL REVIEW C,110(6): DEC 2, 2024
  DOI: 10.1103/PhysRevC.110.064303
• BASS XLIII. Optical, UV, and X-ray emission properties of unobscured Swift/BAT active galactic nuclei
  Author(s): Gupta, Kriti K.; Ricci, Claudio; Temple, Matthew J.; Tortosa, Alessia; Koss, Michael J.; Assef, Roberto J.; et al.
  Source: ASTRONOMY & ASTROPHYSICS,691: NOV 13, 2024
  DOI: 10.1051/0004-6361/202450567
• Prospects for γ-ray observations of the Perseus galaxy cluster with the Cherenkov Telescope Array
  Author(s): Abe, K.; Abe, S.; Acero, F.; Acharyya, A.; Adam, R.; Aguasca-Cabot, A.; et al.
  Source: JOURNAL OF COSMOLOGY AND ASTROPARTICLE PHYSICS(10): OCT, 2024
  DOI: 10.1088/1475-7516/2024/10/004
• ARViS: a bleed-free multi-site automated injection robot for accurate, fast, and dense delivery of virus to mouse and marmoset cerebral cortex
  Author(s): Nomura, Shinnosuke; Terada, Shin-Ichiro; Ebina, Teppei; Uemura, Masato; Masamizu, Yoshito; Ohki, Kenichi; et al.
  Source: NATURE COMMUNICATIONS,15(1): SEP 10, 2024
  DOI: 10.1038/s41467-024-51986-3
• Cartilage tissues regulate systemic aging via ectonucleotide pyrophosphatase/phosphodiesterase 1 in mice
  Author(s): Arima, Takahiro; Sugimoto, Kazuki; Taniwaki, Takuya; Maeda, Kazuya; Shibata, Yuto; Tateyama, Makoto; et al.
  Source: JOURNAL OF BIOLOGICAL CHEMISTRY,300(1): JAN, 2024
  DOI: 10.1016/j.jbc.2023.105512
• Position-specific N- and O-glycosylation of the reactive center loop impacts neutrophil elastase-mediated proteolysis of corticosteroid-binding globulin
  Author(s): Chernykh, Anastasia; Abrahams, Jodie L.; Grant, Oliver C.; Kambanis, Lucas; Sumer-Bayraktar, Zeynep; Ugonotti, Julian; et al.
  Source: JOURNAL OF BIOLOGICAL CHEMISTRY,300(1): JAN, 2024
  DOI: 10.1016/j.jbc.2023.105519