2月24日-3月2日
RIKEN Publication
Published Research Papers of RIKEN Researchers
total number of papers: 58
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Antimicrobial resistance recommendations via electronic health records with graph representation and patient population modeling
Author(s): Gao, Pei; Chen, Zheng; Liu, Xin; Chen, Peng; Matsubara, Yasuko; Sakurai, Yasushi
Source: COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE,261: APR, 2025
DOI: 10.1016/j.cmpb.2025.108616 -
Insights into the low-temperature adaptation of an enzyme as studied through ancestral sequence reconstruction
Author(s): Cui, Shuang; Dasgupta, Subrata; Yagi, Sota; Kimura, Madoka; Furukawa, Ryutaro; Tagami, Shunsuke; et al.
Source: PROTEIN SCIENCE,34(3): MAR, 2025
DOI: 10.1002/pro.70071 -
Unveiling Energy Conversions of the Venus Atmosphere by the Bred Vectors
Author(s): Liang, Jianyu; Sugimoto, Norihiko; Miyoshi, Takemasa
Source: GEOPHYSICAL RESEARCH LETTERS,52(4): FEB 28, 2025
DOI: 10.1029/2024GL112663 -
On the Abiotic Origin of Dimethyl Sulfide: Discovery of Dimethyl Sulfide in the Interstellar Medium
Author(s): Sanz-Novo, Miguel; Rivilla, Victor M.; Endres, Christian P.; Lattanzi, Valerio; Jimenez-Serra, Izaskun; Colzi, Laura; et al.
Source: ASTROPHYSICAL JOURNAL LETTERS,980(2): FEB 20, 2025
DOI: 10.3847/2041-8213/adafa7 -
Scattering and Blow-Up Dichotomy of the Energy-Critical Nonlinear Schrödinger Equation With the Inverse-Square Potential
Author(s): Hamano, Masaru; Ikeda, Masahiro
Source: MATHEMATICAL METHODS IN THE APPLIED SCIENCES: FEB 19, 2025
DOI: 10.1002/mma.10794 -
Internal cap-initiated translation for efficient protein production from circular mRNA
Author(s): Fukuchi, Kosuke; Nakashima, Yuko; Abe, Naoko; Kimura, Seigo; Hashiya, Fumitaka; Shichino, Yuichi; et al.
Source: NATURE BIOTECHNOLOGY: FEB 19, 2025
DOI: 10.1038/s41587-025-02561-8 -
Robust Full-Surface Bonding of Substrate and Electrode for Ultra-Flexible Sensor Integration
Author(s): Takakuwa, Masahito; Inoue, Daishi; Sun, Lulu; Yamamoto, Michitaka; Umezu, Shinjiro; Hashizume, Daisuke; et al.
Source: ADVANCED MATERIALS: FEB 18, 2025
DOI: 10.1002/adma.202417590 -
Polyaddition of Discrete Oligo(butylene succinate)s with Divinyl Ethers for Periodic and Selectively Cleavable Main-Chain Acetal Linkages
Author(s): Ananthu, Ravi Teja; An, Yingjun; Tajima, Yusaku; Taguchi, Hironori; Kikuchi, Takako; Kubo, Tomohiro; et al.
Source: MACROMOLECULES: FEB 17, 2025
DOI: 10.1021/acs.macromol.4c03178 -
Utility of a commercial antibody against NTRK1 for western blotting and potential application to immunohistochemistry in adult mouse brain
Author(s): Nakajima, Kazuo; Ishiwata, Mizuho; Kato, Tadafumi
Source: SCIENTIFIC REPORTS,15(1): FEB 15, 2025
DOI: 10.1038/s41598-025-88514-2 -
Unifying community whole-brain imaging datasets enables robust neuron identification and reveals determinants of neuron position in C. elegans
Author(s): Sprague, Daniel Y.; Rusch, Kevin; Dunn, Raymond L.; Borchardt, Jackson M.; Ban, Steven; Bubnis, Greg; et al.
Source: CELL REPORTS,5(1): JAN 27, 2025
DOI: 10.1016/j.crmeth.2024.100964 -
Useful experimental aspects of small-wedge synchrotron crystallography for accurate structure analysis of protein molecules
Author(s): Hirata, Kunio
Source: ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY,81: JAN, 2025
DOI: 10.1107/S2059798324011987 -
Clonal landscape of autoantibody-secreting plasmablasts in COVID-19 patients
Author(s): Sakakibara, Shuhei; Liu, Yu-Chen; Ishikawa, Masakazu; Edahiro, Ryuya; Shirai, Yuya; Haruna, Soichiro; et al.
Source: LIFE SCIENCE ALLIANCE,7(12): SEP 17, 2024
DOI: 10.26508/lsa.202402774 -
An atlas of the human liver diurnal transcriptome and its perturbation by hepatitis C virus infection
Author(s): Mukherji, Atish; Juehling, Frank; Simanjuntak, Yogy; Crouchet, Emilie; Del Zompo, Fabio; Teraoka, Yuji; et al.
Source: NATURE COMMUNICATIONS,15(1): AUG 29, 2024
DOI: 10.1038/s41467-024-51698-8 -
Developing a Vision and Contact Sensor-Based Android-to-Human Touch System That Enables Face and Arm Touch
Author(s): Fox-Tierney, Aidan E.; Sakai, Kurima; Shiomi, Masahiro; Minato, Takashi; Ishiguro, Hiroshi
Source: IEEE ROBOTICS AND AUTOMATION LETTERS,10(4): APR, 2025
DOI: 10.1109/LRA.2025.3539524 -
Extracting neutron skin from elastic proton-nucleus scattering with deep neural network
Author(s): Yang, G. H.; Kuang, Y.; Yang, Z. X.; Li, Z. P.
Source: PHYSICS LETTERS B,862: MAR, 2025
DOI: 10.1016/j.physletb.2025.139301 -
Simultaneous excitation of two atoms by a single photon using shortcut to adiabaticity
Author(s): Zhou, Kuan-Yu; Yan, Ke-Xiong; Chen, Ye-Hong; Xia, Yan
Source: LASER PHYSICS LETTERS,22(3): MAR 1, 2025
DOI: 10.1088/1612-202X/adb4c7 -
Clustering Theorem in 1D Long-Range Interacting Systems at Arbitrary Temperatures
Author(s): Kimura, Yusuke; Kuwahara, Tomotaka
Source: COMMUNICATIONS IN MATHEMATICAL PHYSICS,406(3): MAR, 2025
DOI: 10.1007/s00220-025-05242-4 -
Polyamine depletion limits progression of acute leukaemia
Author(s): Gao, Weiman; Karsa, Mawar; Xiao, Lin; Spurling, Dayna; Karsa, Ayu; Ronca, Emma; et al.
Source: INTERNATIONAL JOURNAL OF CANCER: FEB 22, 2025
DOI: 10.1002/ijc.35362 -
A design principle for neuronal firing with up-down oscillation through Na+ dynamics
Author(s): Sato, Tomohide R.; Ode, Koji L.; Kinoshita, Fukuaki L.; Ueda, Hiroki R.
Source: ISCIENCE,28(2): FEB 21, 2025
DOI: 10.1016/j.isci.2025.111904 -
The role of memory in affirming-the-consequent fallacy
Author(s): Higuchi, Yoko; Oblak, Ethan; Nakamura, Hiroko; Yamada, Makiko; Shibata, Kazuhisa
Source: ISCIENCE,28(2): FEB 21, 2025
DOI: 10.1016/j.isci.2025.111889 -
The Biology of Natural Polymers Accelerates and Expands the Science of Biomacromolecules: A Focus on Structural Proteins
Author(s): Numata, Keiji
Source: BIOMACROMOLECULES: FEB 18, 2025
DOI: 10.1021/acs.biomac.4c01621 -
Remote Hydrogen Bonding between Ligand and Substrate Accelerates C-H Bond Activation and Enables Switchable Site Selectivity
Author(s): De, Pinaki Bhusan; Okamoto, Kazuhiro; Sekar, Jayakumar; Asako, Sobi; Ilies, Laurean
Source: ANGEWANDTE CHEMIE-INTERNATIONAL EDITION,64(8): FEB 17, 2025
DOI: 10.1002/anie.202419144 -
SN 2021foa: the bridge between SN IIn and Ibn
Author(s): Gangopadhyay, Anjasha; Dukiya, Naveen; Moriya, Takashi J.; Tanaka, Masaomi; Maeda, Keiichi; Howell, D. Andrew; et al.
Source: MONTHLY NOTICES OF THE ROYAL ASTRONOMICAL SOCIETY,537(3): FEB 14, 2025
DOI: 10.1093/mnras/staf187 -
Transplantation of genome-edited retinal organoids restores some fundamental physiological functions coordinated with severely degenerated host retinas
Author(s): Watanabe, Mikiya; Yamada, Takayuki; Koike, Chieko; Takahashi, Masayo; Tachibana, Masao; Mandai, Michiko
Source: STEM CELL REPORTS,20(2): FEB 11, 2025
DOI: 10.1016/j.stemcr.2024.102393 -
Cardiac Reprogramming and Gata4 Overexpression Reduce Fibrosis and Improve Diastolic Dysfunction in Heart Failure With Preserved Ejection Fraction
Author(s): Yamada, Yu; Sadahiro, Taketaro; Nakano, Koji; Honda, Seiichiro; Abe, Yuto; Akiyama, Tatsuya; et al.
Source: CIRCULATION,151(6): FEB 11, 2025
DOI: 10.1161/CIRCULATIONAHA.123.067504 -
Impact of dark matter distribution on neutron star properties
Author(s): Kumar, Ankit; Sotani, Hajime
Source: PHYSICAL REVIEW D,111(4): FEB 6, 2025
DOI: 10.1103/PhysRevD.111.043016 -
Searching Optimum Route With Variable Travel Time
Author(s): Shuki, Yamauchi; Junpei, Tokunaga; Hiroyuki, Ebara; Naonori, Ueda
Source: IEEE ACCESS,13: , 2025
DOI: 10.1109/ACCESS.2025.3529027 -
Two-pion emission decays of negative parity singly heavy baryons
Author(s): Ponkhuha, Nongnapat; Arifi, Ahmad Jafar; Samart, Daris
Source: PHYSICAL REVIEW D,110(11): DEC 1, 2024
DOI: 10.1103/PhysRevD.110.114046 -
Genetic drivers and cellular selection of female mosaic X chromosome loss
Author(s): Liu, Aoxing; Genovese, Giulio; Zhao, Yajie; Pirinen, Matti; Zekavat, Seyedeh M.; Kentistou, Katherine A.; et al.
Source: NATURE,631(8019): JUL 4, 2024
DOI: 10.1038/s41586-024-07533-7 -
Time-Distributed Vision Transformer Stacked With Transformer for Heart Failure Detection Based on Echocardiography Video
Author(s): Ramadhan, Mgs M. Luthfi; Yudha, Adyatma W. A. Nugraha; Rachmadi, Muhammad Febrian; Tandayu, Kevin Moses Hanky, Jr.; Liastuti, Lies Dina; Jatmiko, Wisnu
Source: IEEE ACCESS,12: , 2024
DOI: 10.1109/ACCESS.2024.3510774 -
Design and performance prediction of chemically recuperated ammonia-based power generation
Author(s): Waluyo, Rahmat; Ahmad, Azaria Haykal; Aziz, Muhammad
Source: THERMAL SCIENCE AND ENGINEERING PROGRESS,59: MAR, 2025
DOI: 10.1016/j.tsep.2025.103378 -
Strigolactone and karrikin receptors regulate phytohormone biosynthetic and catabolic processes
Author(s): Li, Liangliang; Gupta, Aarti; Zhu, Chenbo; Xu, Kun; Watanabe, Yasuko; Tanaka, Maho; et al.
Source: PLANT CELL REPORTS,44(3): MAR, 2025
DOI: 10.1007/s00299-025-03456-3 -
Exploring the Neutrino Mass Hierarchy from Isotopic Ratios of Supernova Nucleosynthesis Products in Presolar Grains
Author(s): Yao, Xingqun; Kajino, Toshitaka; Luo, Yudong; Hayakawa, Takehito; Suzuki, Toshio; Ko, Heamin; et al.
Source: ASTROPHYSICAL JOURNAL,980(2): FEB 20, 2025
DOI: 10.3847/1538-4357/adaaf2 -
KLF2 expression in IgG plasma cells at their induction site regulates the migration program
Author(s): Ise, Wataru; Koike, Takuya; Shimada, Nozomi; Yamamoto, Hiromi; Tai, Yuki; Shirai, Taiichiro; et al.
Source: JOURNAL OF EXPERIMENTAL MEDICINE,222(5): FEB 20, 2025
DOI: 10.1084/jem.20241019 -
Gradual Domain Adaptation via Normalizing Flows
Author(s): Sagawa, Shogo; Hino, Hideitsu
Source: NEURAL COMPUTATION,37(3): FEB 14, 2025
DOI: 10.1162/neco_a_01734 -
Krylov fractality and complexity in generic random matrix ensembles
Author(s): Bhattacharjee, Budhaditya; Nandy, Pratik
Source: PHYSICAL REVIEW B,111(6): FEB 6, 2025
DOI: 10.1103/PhysRevB.111.L060202 -
Spin current generation due to differential rotation
Author(s): Funato, Takumi; Kinoshita, Shunichiro; Tanahashi, Norihiro; Nakamura, Shin; Matsuo, Mamoru
Source: PHYSICAL REVIEW B,111(6): FEB 6, 2025
DOI: 10.1103/PhysRevB.111.L060403 -
Probing quantum chaos through singular-value correlations in the sparse non-Hermitian Sachdev-Ye-Kitaev model
Author(s): Nandy, Pratik; Pathak, Tanay; Tezuka, Masaki
Source: PHYSICAL REVIEW B,111(6): FEB 6, 2025
DOI: 10.1103/PhysRevB.111.L060201 -
Study on the relationship between microbial composition within obstructive biliary stents and the severity of obstruction and duration of stent placement
Author(s): Sugawara, Ichiro; Kawahara, Yosuke; Takayasu, Lena; Isshi, Kimio; Kato, Masayuki; Ono, Shingo; et al.
Source: PLOS ONE,20(1): JAN 9, 2025
DOI: 10.1371/journal.pone.0317230 -
Design of Ligands for Selective and Efficient C―H Functionalization
Author(s): Asako, Sobi; Ilies, Laurean
Source: JOURNAL OF SYNTHETIC ORGANIC CHEMISTRY JAPAN,83(2): , 2025
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Thermal Conductive Properties of a Resistance-Controlled (RC) Interface for No-Insulation (NI) Scheme Coils
Author(s): Tanaka, Yuya; Suetomi, Yu; Kawahata, Mizuho; Takao, Tomoaki; Nakamura, Kazuya; Kobayashi, Kensuke; et al.
Source: IEEE TRANSACTIONS ON APPLIED SUPERCONDUCTIVITY,35(5): AUG, 2025
DOI: 10.1109/TASC.2025.3534189 -
Discovery of niclosamide as a p300/transcription factor protein-protein interaction inhibitor
Author(s): Fitriastuti, Dhina; Miura, Kazuki; Okada, Satoshi; Hirano, Hiroyuki; Osada, Hiroyuki; Nakamura, Hiroyuki
Source: BIOORGANIC & MEDICINAL CHEMISTRY,121: APR 15, 2025
DOI: 10.1016/j.bmc.2025.118114 -
Retuning radio astronomy for axion dark matter with neutron stars
Author(s): De Miguel, Javier
Source: PHYSICS LETTERS B,862: MAR, 2025
DOI: 10.1016/j.physletb.2025.139328 -
Physics case for quarkonium studies at the Electron Ion Collider
Author(s): Boer, Daniel; Flett, Chris A.; Flore, Carlo; Kikola, Daniel; Lansberg, Jean-Philippe; Nefedov, Maxim; et al.
Source: PROGRESS IN PARTICLE AND NUCLEAR PHYSICS,142: MAR, 2025
DOI: 10.1016/j.ppnp.2025.104162 -
Artificial thermal flow control on thermoelectric device by tuning electrode absorptivity
Author(s): Saito, Sohei; Yamamoto, Ayaha; Lu, Yu-Jung; Tanaka, Takuo; Kubo, Wakana
Source: DISCOVER NANO,20(1): FEB 24, 2025
DOI: 10.1186/s11671-025-04193-y -
Co-option and neofunctionalization of stomatal executors for defence against herbivores in Brassicales
Author(s): Shirakawa, Makoto; Oguro, Tomoki; Sugano, Shigeo S.; Yamaoka, Shohei; Sagara, Mayu; Tanida, Mai; et al.
Source: NATURE PLANTS: FEB 24, 2025
DOI: 10.1038/s41477-025-01921-1 -
Structural insights into how DEK nucleosome binding facilitates H3K27 trimethylation in chromatin
Author(s): Kujirai, Tomoya; Echigoya, Kenta; Kishi, Yusuke; Saeki, Mai; Ito, Tomoko; Kato, Junko; et al.
Source: NATURE STRUCTURAL & MOLECULAR BIOLOGY: FEB 21, 2025
DOI: 10.1038/s41594-025-01493-w -
Exploring molecular superfluidity in hydrogen clusters
Author(s): Otani, Hatsuki; Kuma, Susumu; Miura, Shinichi; Mustafa, Majd; Lee, Jeff C. W.; Djuricanin, Pavle; et al.
Source: SCIENCE ADVANCES,11(8): FEB 21, 2025
DOI: 10.1126/sciadv.adu1093 -
Evidence for Jet/Outflow Shocks Heating the Environment around the Class I Protostellar Source Elias 29: FAUST XXI
Author(s): Oya, Yoko; Saiga, Eri; Miotello, Anna; Koutoulaki, Maria; Johnstone, Doug; Ceccarelli, Cecilia; et al.
Source: ASTROPHYSICAL JOURNAL,980(2): FEB 20, 2025
DOI: 10.3847/1538-4357/adabe7 -
Generating a highly uniform magnetic field inside the magnetically shielded room of the n2EDM experiment
Author(s): Abel, C.; Ayres, N. J.; Ban, G.; Bison, G.; Bodek, K.; Bondar, V.; et al.
Source: EUROPEAN PHYSICAL JOURNAL C,85(2): FEB 20, 2025
DOI: 10.1140/epjc/s10052-025-13902-x -
Distinguishing clinical and genetic risk factors for suicidal ideation and behavior in a diverse hospital population
Author(s): Colbert, Sarah M. C.; Lepow, Lauren; Fennessy, Brian; Iwata, Nakao; Ikeda, Masashi; Saito, Takeo; et al.
Source: TRANSLATIONAL PSYCHIATRY,15(1): FEB 20, 2025
DOI: 10.1038/s41398-025-03287-6 -
The time evolution of the low-energy deuteron fluxes measured in Cosmic Rays with the PAMELA experiment from the 23rd solar minimum to the 24th solar maximum
Author(s): Lenni, A.; Boezio, M.; Munini, R.; Menn, W.; Marcelli, N.; Ngobeni, M. D.; et al.
Source: ASTROPARTICLE PHYSICS,168: JUN, 2025
DOI: 10.1016/j.astropartphys.2025.103089 -
The RNA-binding protein Puf5 and the HMGB protein Ixr1 regulate cell cycle-specific expression of CLB1 and CLB2 in Saccharomyces cerevisiae
Author(s): Sato, Megumi; Rana, Varsha; Suda, Yasuyuki; Mizuno, Tomoaki; Irie, Kenji
Source: PLOS ONE,20(2): FEB 3, 2025
DOI: 10.1371/journal.pone.0316433 -
An Osteoblast-Specific Enhancer and Subenhancer Cooperatively Regulate Runx2 Expression in Chondrocytes
Author(s): Matsuo, Yuki; Qin, Xin; Moriishi, Takeshi; Kawata-Matsuura, Viviane K. S.; Komori, Hisato; Sakane, Chiharu; et al.
Source: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES,26(4): FEB, 2025
DOI: 10.3390/ijms26041653 -
Multiple Mechanisms to Regulate Actin Functions: "Fundamental" Versus Lineage-Specific Mechanisms and Hierarchical Relationships
Author(s): Uyeda, Taro Q. P.; Yamazaki, Yosuke; Kijima, Saku T.; Noguchi, Taro Q. P.; Ngo, Kien Xuan
Source: BIOMOLECULES,15(2): FEB, 2025
DOI: 10.3390/biom15020279 -
RelB and C/EBPα critically regulate the development of Peyer's patch mononuclear phagocytes
Author(s): Kanaya, Takashi; Jinnohara, Toshi; Sakakibara, Sayuri; Tachibana, Naoko; Sasaki, Takaharu; Kato, Tamotsu; et al.
Source: MUCOSAL IMMUNOLOGY,18(1): FEB, 2025
DOI: 10.1016/j.mucimm.2024.10.005 -
Enantioselective [3+2] Annulation of Aldimines with Alkynes by Scandium-Catalyzed C-H Activation
Author(s): Mishra, Aniket; Hu, Jiameng; Cong, Xuefeng; Zhuo, Qingde; Nishiura, Masayoshi; Luo, Gen; et al.
Source: LANCET GASTROENTEROLOGY & HEPATOLOGY,10(2): FEB 1, 2025
DOI: 10.1002/anie.202419567 -
Discovery and identification of a novel yeast species, Hanseniaspora drosophilae sp. nov., from Drosophila in Okinawa, Japan
Author(s): Seike, Taisuke; Takekata, Hiroki; Kono, Keiko; Sakata, Natsue; Kotani, Hazuki; Furusawa, Chikara; et al.
Source: INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY,75(2): , 2025
DOI: 10.1099/ijsem.0.006661