6月2日-6月8日

Published Research Papers of RIKEN Researchers
total number of papers: 59

• m6A RNA methylation-mediated control of global APC expression is required for local translation of 硫-actin and axon development
  Author(s): Broix, Loic; Roy, Rohini; Shohayeb, Belal; Oomoto, Ikumi; Umeshima, Hiroki; Wang, Dan Ohtan
  Source: CELL REPORTS,44(6): JUN 24, 2025
  DOI: 10.1016/j.celrep.2025.115727
• The transcriptomes, connections and development of submucosal neuron classes in the mouse small intestine
  Author(s): Li, Wei; Morarach, Khomgrit; Liu, Ziwei; Banerjee, Sanghita; Chen, Yanan; Harb, Ashley L.; et al.
  Source: NATURE NEUROSCIENCE: MAY 29, 2025
  DOI: 10.1038/s41593-025-01962-x
• Human-AI collaboration for modeling heat conduction in nanostructures
  Author(s): Ding, Wenyang; Guo, Jiang; An, Meng; Tsuda, Koji; Shiomi, Junichiro
  Source: NPJ COMPUTATIONAL MATERIALS,11(1): MAY 28, 2025
  DOI: 10.1038/s41524-025-01657-8
• Orbital Collapse in Exotic Atoms and Its Effect on Dynamics
  Author(s): Tong, X. M.; Tokesi, K.; Kato, D.; Okumura, T.; Okada, S.; Azuma, T.
  Source: PHYSICAL REVIEW LETTERS,134(19): MAY 13, 2025
  DOI: 10.1103/PhysRevLett.134.193001
• A Pentatricopeptide Repeat Protein Restores Fertility in Tadukan-Type Cytoplasmic Male Sterile Rice via the Cleavage of the Mitochondrial orf312 RNA
  Author(s): Takatsuka, Ayumu; Iwai, Yuko; Mireau, Hakim; Kazama, Tomohiko; Ichida, Hiroyuki; Abe, Tomoko; et al.
  Source: PHYSIOLOGIA PLANTARUM,177(3): MAY, 2025
  DOI: 10.1111/ppl.70308
• Probing the pygmy dipole resonance of 50Ca by Coulomb excitation
  Author(s): Lemarie, J.; Togano, Y.; Nakamura, T.; Kobayashi, T.; Aumann, T.; Baba, H.; et al.
  Source: NUCLEAR PHYSICS A,1062: OCT, 2025
  DOI: 10.1016/j.nuclphysa.2025.123152
• A comparison between hollow cone illumination and wavelet transform methods for chromatin fiber orientation measurement
  Author(s): Hayashida, Misa; Phengchat, Rinyaporn; Malac, Marek; Shimada, Keiko; Mori, Shigeo; Takahashi, Yoshio; et al.
  Source: MICRON,196: SEP, 2025
  DOI: 10.1016/j.micron.2025.103859
• Porphyran from discolored nori prevents metabolic syndrome microbiota-bile acid-ceramide
  Author(s): Yokoyama, Yoko; Takashina, Yoko; Morel, Jean-David; Taworntawat, Tanon; Kitamura, Naho; Nagano, Utana; et al.
  Source: ISCIENCE,28(6): JUN 20, 2025
  DOI: 10.1016/j.isci.2025.112603
• Conceptual design on the field of view of celestial navigation systems for maritime autonomous surface ships
  Author(s): Wakita, Kouki; Hane, Fuyuki; Sekiguchi, Takeshi; Shimizu, Shigehito; Mitani, Shinji; Akimoto, Youhei; et al.
  Source: JOURNAL OF MARINE SCIENCE AND TECHNOLOGY: JUN 2, 2025
  DOI: 10.1007/s00773-025-01064-0
• Tail Bounds on the Runtime of Categorical Compact Genetic Algorithm
  Author(s): Hamano, Ryoki; Uchida, Kento; Shirakawa, Shinichi; Morinaga, Daiki; Akimoto, Youhei
  Source: EVOLUTIONARY COMPUTATION,33(2): JUN 2, 2025
  DOI: 10.1162/evco_a_00361
• Differentiable Modeling of Planet and Substellar Atmosphere: High-resolution Emission, Transmission, and Reflection Spectroscopy with ExoJAX2
  Author(s): Kawahara, Hajime; Kawashima, Yui; Tada, Shotaro; Ishikawa, Hiroyuki Tako; Hosokawa, Ko; Kasagi, Yui; et al.
  Source: ASTROPHYSICAL JOURNAL,985(2): JUN 1, 2025
  DOI: 10.3847/1538-4357/adcba2
• Evolution of the Inner Accretion Flow and the White Dwarf Spin Pulse during the 2023 Outburst in GK Persei
  Author(s): Kimura, Mariko; Hayashi, Takayuki; Wada, Yuuki; Iwakiri, Wataru; Sako, Shigeyuki; Veresvarska, Martina; et al.
  Source: ASTROPHYSICAL JOURNAL,985(2): JUN 1, 2025
  DOI: 10.3847/1538-4357/adcf27
• Future projections for mammalian whole-brain simulations based on technological trends in related fields
  Author(s): Igarashi, Jun
  Source: NEUROSCIENCE RESEARCH,215: JUN, 2025
  DOI: 10.1016/j.neures.2024.11.005
• 3D Genome Constrains Breakpoints of Inversions That Can Act as Barriers to Gene Flow in the Stickleback
  Author(s): Yamasaki, Yo Y.; Toyoda, Atsushi; Kadota, Mitsutaka; Kuraku, Shigehiro; Kitano, Jun
  Source: MOLECULAR ECOLOGY: MAY 31, 2025
  DOI: 10.1111/mec.17814
• Structural basis of RNAPII transcription on the nucleosome containing histone variant H2A.B
  Author(s): Akatsu, Munetaka; Hirano, Rina; Kujirai, Tomoya; Ogasawara, Mitsuo; Ehara, Haruhiko; Sekine, Shun-ichi; et al.
  Source: EMBO JOURNAL: MAY 30, 2025
  DOI: 10.1038/s44318-025-00473-6
• Transcriptional gene network involved in drought stress response: application for crop breeding in the context of climate change
  Author(s): Nakashima, Kazuo; Yamaguchi-Shinozaki, Kazuko; Shinozaki, Kazuo
  Source: PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES,380(1927): MAY 29, 2025
  DOI: 10.1098/rstb.2024.0236
• Dynamics of the intermediate-mass-element ejecta in the supernova remnant Cassiopeia A studied with XRISM
  Author(s): Suzuki, Shunsuke; Sonoda, Haruto; Sakai, Yusuke; Ohshiro, Yuken; Yamada, Shinya; Agarwal, Manan; et al.
  Source: PUBLICATIONS OF THE ASTRONOMICAL SOCIETY OF JAPAN: MAY 28, 2025
  DOI: 10.1093/pasj/psaf040
• High Optical-to-X-Ray Polarization Ratio Reveals Compton Scattering in BL Lacertae's Jet
  Author(s): Agudo, Ivan; Liodakis, Ioannis; Otero-Santos, Jorge; Middei, Riccardo; Marscher, Alan; Jorstad, Svetlana; et al.
  Source: ASTROPHYSICAL JOURNAL LETTERS,985(1): MAY 20, 2025
  DOI: 10.3847/2041-8213/adc572
• Proof of absence of local conserved quantities in two- and higher-dimensional quantum Ising models
  Author(s): Chiba, Yuuya
  Source: PHYSICAL REVIEW B,111(19): MAY 16, 2025
  DOI: 10.1103/PhysRevB.111.195130
• Bayesian inference analysis of jet quenching using inclusive jet and hadron suppression measurements
  Author(s): Ehlers, R.; Chen, Y.; Mulligan, J.; Ji, Y.; Kumar, A.; Mak, S.; et al.
  Source: PHYSICAL REVIEW C,111(5): MAY 15, 2025
  DOI: 10.1103/PhysRevC.111.054913
• In search of global 21-cm signal using artificial neural network in light of ARCADE 2
  Author(s): Mohapatra, Vivekanand; Johnny, J.; Natwariya, Pravin Kumar; Goswami, Jishnu; Nayak, Alekha C.
  Source: EUROPEAN PHYSICAL JOURNAL C,85(5): MAY 14, 2025
  DOI: 10.1140/epjc/s10052-025-14256-0
• A universal language for finding mass spectrometry data patterns
  Author(s): Damiani, Tito; Jarmusch, Alan K.; Aron, Allegra T.; Petras, Daniel; Phelan, Vanessa V.; Zhao, Haoqi Nina; et al.
  Source: NATURE METHODS: MAY 12, 2025
  DOI: 10.1038/s41592-025-02660-z
• Extracting intrinsic superconducting properties in intercalated layered superconductors using an extended 2D Tinkham model
  Author(s): Liu, Yue; Zhang, Yuhang; Lu, Zouyouwei; Li, Dong; Itahashi, Yuki M.; Zhao, Zhanyi; et al.
  Source: PHYSICAL REVIEW MATERIALS,9(4): APR 28, 2025
  DOI: 10.1103/PhysRevMaterials.9.L041001
• Black hole from entropy maximization
  Author(s): Yokokura, Yuki
  Source: PHYSICAL REVIEW D,111(2): JAN 28, 2025
  DOI: 10.1103/PhysRevD.111.026023
• Conditional probabilistic-based domain adaptation for cross-subject EEG-based emotion recognition
  Author(s): Cheng, Shichao; Wang, Yifan; Mei, Jiawei; Lin, Guang; Zhang, Jianhai; Kong, Wanzeng
  Source: COGNITIVE NEURODYNAMICS,19(1): DEC, 2025
  DOI: 10.1007/s11571-025-10272-8
• Temperature vaulting: A method for screening of slow- and tight-binding inhibitors that selectively target kinases in their non-native state
  Author(s): Suzuki, Sora; Umezawa, Koji; Furuie, Gaku; Kikuchi, Masaki; Nakamura, Daichi G. M.; Fukahori, Nanae; et al.
  Source: EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY,295: OCT 5, 2025
  DOI: 10.1016/j.ejmech.2025.117789
• Strain-induced crystallization behaviors of natural rubber with additional lipids
  Author(s): Nakatsuka, Tomoaki; Masunaga, Hiroyasu; Tsuji, Yui; Numata, Keiji
  Source: POLYMER,332: JUL 16, 2025
  DOI: 10.1016/j.polymer.2025.128575
• Prevailing triaxial shapes in atomic nuclei and a quantum theory of rotation of composite objects
  Author(s): Otsuka, T.; Tsunoda, Y.; Shimizu, N.; Utsuno, Y.; Abe, T.; Ueno, H.
  Source: EUROPEAN PHYSICAL JOURNAL A,61(5): JUN 2, 2025
  DOI: 10.1140/epja/s10050-025-01553-1
• Galactic transient sources with the Cherenkov Telescope Array Observatory
  Author(s): Abe, K.; Abe, S.; Abhir, J.; Abhishek, A.; Acero, F.; Acharyya, A.; et al.
  Source: MONTHLY NOTICES OF THE ROYAL ASTRONOMICAL SOCIETY,540(1): JUN, 2025
  DOI: 10.1093/mnras/staf655
• Impaired Cognitive Flexibility With Preserved Learning in an Amyloid Precursor Protein Knock-In Mouse Model of Amyloidopathy
  Author(s): Dumont, Julie R.; Sheppard, Paul A. S.; Fodor, Chris; Coto, M. Alexander; Yang, Sabrina; Saito, Takashi; et al.
  Source: GENES BRAIN AND BEHAVIOR,24(3): JUN, 2025
  DOI: 10.1111/gbb.70024
• Birch reductive arylation by mechanochemical anionic activation of polycyclic aromatic compounds
  Author(s): Toyama, Yoshifumi; Yagi, Akiko; Itami, Kenichiro; Ito, Hideto
  Source: NATURE COMMUNICATIONS,16(1): MAY 30, 2025
  DOI: 10.1038/s41467-025-60318-y
• Self-Supervised WiFi-Based Identity Recognition in Multi-User Smart Environments
  Author(s): Rizk, Hamada; Elmogy, Ahmed
  Source: SENSORS,25(10): MAY 14, 2025
  DOI: 10.3390/s25103108
• Environmental fields of moderate clear air turbulence above 400 hPa around Japan
  Author(s): Ito, Soshi; Miyamoto, Yoshiaki; Kajikawa, Yoshiyuki
  Source: ATMOSPHERIC SCIENCE LETTERS,26(5): MAY, 2025
  DOI: 10.1002/asl.1292
• Ultrafast on-demand exciton formation in a single-molecule junction by tailored terahertz pulses
  Author(s): Kimura, Kensuke; Tamaki, Ryo; Lee, Minhui; Ouyang, Xingmei; Kusaba, Satoshi; Jaculbia, Rafael B.; et al.
  Source: SCIENCE,387(6738): MAR 7, 2025
  DOI: 10.1126/science.ads2776
• Synthesis of LiZnBO3:Mn and Its Application to Neutron Imaging
  Author(s): Kawamata, Shunsuke; Higuchi, Mikio; Taketani, Atsushi; Kobayashi, Tomohiro; Wakabayashi, Yasuo; Otake, Yoshie; et al.
  Source: SENSORS AND MATERIALS,37(5): , 2025
  DOI: 10.18494/SAM5524
• Possible role of mosaic mutations of neurodevelopmental disorder-related genes in bipolar disorder: Lessons from Kmt2c chimeric heterozygous knockout mice
  Author(s): Nakamura, Takumi; Nakajima, Kazuo; Fujimori-Tonou, Noriko; Kasahara, Takaoki; Tsuboi, Takashi; Kato, Tadafumi
  Source: NEUROSCIENCE RESEARCH,217: AUG, 2025
  DOI: 10.1016/j.neures.2025.05.005
• FedMDD: Multi-deliberation based calibration for federated long-tailed learning
  Author(s): Wang, Yiwen; Li, Jiaxin; Zhang, Heye; Zhang, Jingfeng; Wane, Feng; Qiu, Anqi; et al.
  Source: KNOWLEDGE-BASED SYSTEMS,323: JUL 19, 2025
  DOI: 10.1016/j.knosys.2025.113741
• Quantum dynamics in Krylov space: Methods and applications
  Author(s): Nandy, Pratik; Matsoukas-Roubeas, Apollonas S.; Martinez-Azcona, Pablo; Dymarsky, Anatoly; del Campo, Adolfo
  Source: PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS,1125: JUN 18, 2025
  DOI: 10.1016/j.physrep.2025.05.001
• Jaccard dissimilarity in stochastic community models based on the species-independence assumption
  Author(s): Iritani, Ryosuke; Ontiveros, Vicente J.; Alonso, David; Capitan, Jose A.; Godsoe, William; Tatsumi, Shinichi
  Source: ECOGRAPHY: JUN 4, 2025
  DOI: 10.1002/ecog.07737
• Collective predictive coding as model of science: formalizing scientific activities towards generative science
  Author(s): Taniguchi, Tadahiro; Takagi, Shiro; Otsuka, Jun; Hayashi, Yusuke; Hamada, Hiro Taiyo
  Source: ROYAL SOCIETY OPEN SCIENCE,12(6): JUN 4, 2025
  DOI: 10.1098/rsos.241678
• Glissandra oviformis n. sp.: a novel predatory flagellate illuminates the character evolution within the eukaryotic clade CRuMs
  Author(s): Yazaki, Euki; Harada, Ryo; Isogai, Ryu; Bamba, Kohei; Ishida, Ken-ichiro; Inagaki, Yuji; et al.
  Source: OPEN BIOLOGY,15(6): JUN 4, 2025
  DOI: 10.1098/rsob.250057
• Development of Operando Hard X-ray Ptychography: Application to Thin-Film All-Solid-State Lithium-Ion Batteries
  Author(s): Sasaki, Yuhei; Ishiguro, Nozomu; Uematsu, Hideshi; Takazawa, Shuntaro; Abe, Masaki; Okawa, Naru; et al.
  Source: JOURNAL OF PHYSICAL CHEMISTRY C: JUN 3, 2025
  DOI: 10.1021/acs.jpcc.4c08299
• Synthesis of Parent Peropyrene and Its Derivatization
  Author(s): Sanematsu, Haruki; Bulgarevich, Kirill; Dhara, Barun; Takimiya, Kazuo
  Source: ORGANIC LETTERS: JUN 2, 2025
  DOI: 10.1021/acs.orglett.5c01172
• Decentralized Federated Graph Learning With Lightweight Zero Trust Architecture for Next-Generation Networking Security
  Author(s): Zhou, Xiaokang; Liang, Wei; Wang, Kevin I-Kai; Yada, Katsutoshi; Yang, Laurence T.; Ma, Jianhua; et al.
  Source: IEEE JOURNAL ON SELECTED AREAS IN COMMUNICATIONS,43(6): JUN, 2025
  DOI: 10.1109/JSAC.2025.3560012
• A magnetar powers the luminous supernova 2023pel, which is associated with a long gamma-ray burst
  Author(s): Aguilar, L. M. Roman; Saez, M. M.; Ertini, K.; Bersten, M. C.
  Source: ASTRONOMY & ASTROPHYSICS,698: MAY 29, 2025
  DOI: 10.1051/0004-6361/202452788
• Neural basis of self-esteem: social cognitive and emotional regulation insights
  Author(s): Aki, Morio; Shibata, Mami; Fujita, Yoshihisa; Spantios, Michael; Kobayashi, Kei; Ueno, Tsukasa; et al.
  Source: FRONTIERS IN NEUROSCIENCE,19: MAY 20, 2025
  DOI: 10.3389/fnins.2025.1588567
• Chemistry and Application of Methylene-bridged Cycloparaphenylenes
  Author(s): Yagi, Akiko; Kono, Hideya; Amaike, Kazuma; Itami, Kenichiro
  Source: JOURNAL OF SYNTHETIC ORGANIC CHEMISTRY JAPAN,83(5): , 2025
  
• A Unifying Framework to Enable Artificial Intelligence in High-Performance Computing Workflows
  Author(s): Domke, Jens; Wahib, Mohamed; Dubey, Anshu; Ben-Nun, Tal; Draeger, Erik W.
  Source: COMPUTING IN SCIENCE & ENGINEERING,27(1): JAN, 2025
  DOI: 10.1109/MCSE.2025.3543940
• Noisy data-based attack: A new type of untargeted attack in Federated Learning and its countermeasures
  Author(s): Dao, Manh Cuong; Nguyen, Phi Le; Pham, Huy Hieu; Nguyen, Thanh Hung; Chen, Peng; Wahib, Mohamed; et al.
  Source: FUTURE GENERATION COMPUTER SYSTEMS-THE INTERNATIONAL JOURNAL OF ESCIENCE,173: DEC, 2025
  DOI: 10.1016/j.future.2025.107900
• Mechanism study of femtosecond laser-induced periodic surface structures on single-crystal silicon: Insights from two-temperature model and self-organization
  Author(s): Li, Zhaoxu; Bai, Shi; Chen, Hao; Han, Mingyang; Yang, Xiao; Sugioka, Koji
  Source: JOURNAL OF LASER APPLICATIONS,37(3): AUG, 2025
  DOI: 10.2351/7.0001786
• Evaluating the effect of 1H decoupling on 19F longitudinal relaxation and signal line shape in 5-Fluorotryptophan
  Author(s): Toyama, Yuki; Takeuchi, Koh; Shimada, Ichio
  Source: JOURNAL OF MAGNETIC RESONANCE,377: AUG, 2025
  DOI: 10.1016/j.jmr.2025.107899
• Projection-specific and reversible functional blockage in the association cortex of macaque monkeys
  Author(s): Yokoo, Seiichirou; Higo, Takayasu; Gerard-Mercier, Florian; Oguchi, Mineki; Sakagami, Masamichi; Bito, Haruhiko; et al.
  Source: NEUROSCIENCE RESEARCH,217: AUG, 2025
  DOI: 10.1016/j.neures.2025.05.004
• Tetraspanin7 in adipose tissue remodeling and its impact on metabolic health
  Author(s): Nemoto, Shino; Uchida, Kazuyo; Kubota, Tetsuya; Nakayama, Manabu; Han, Yong-Woon; Ohno, Hiroshi; et al.
  Source: MOLECULAR METABOLISM,97: JUL, 2025
  DOI: 10.1016/j.molmet.2025.102168
• MPS1 promotes timely spindle bipolarization to prevent kinetochore-microtubule attachment errors in oocytes
  Author(s): Yoshida, Shuhei; Nakagawa, Reiko; Asai, Kohei; Kitajima, Tomoya S.
  Source: EMBO JOURNAL: JUN 4, 2025
  DOI: 10.1038/s44318-025-00461-w
• Imparting Marine Biodegradability to Poly(Ethylene Succinate) (PES) by Blending with a PES-Based Copolymer
  Author(s): Kumagai, Sumito; Imada, Motosuke; Hayashi, Senri; Abe, Hideki; Asakura, Noriyuki; Takenaka, Yasumasa
  Source: ACS APPLIED POLYMER MATERIALS: JUN 2, 2025
  DOI: 10.1021/acsapm.5c00486
• Charge-induced energy shift of a single-spin qubit under a magnetic field gradient
  Author(s): Kobayashi, Takashi; Noiri, Akito; Nakajima, Takashi; Takeda, Kenta; Camenzind, Leon C.; Jin, Ik Kyeong; et al.
  Source: PHYSICAL REVIEW APPLIED,23(5): MAY 28, 2025
  DOI: 10.1103/PhysRevApplied.23.054078
• Heterogeneous condensates of transcription factors in embryonic stem cells: Molecular simulations
  Author(s): Mizutani, Azuki; Tan, Cheng; Sugita, Yuji; Takada, Shoji
  Source: BIOPHYSICAL JOURNAL,124(10): MAY 20, 2025
  DOI: 10.1016/j.bpj.2025.04.001
• Octave-spanning, continuously tunable injection-seeded backward terahertz-wave parametric oscillator
  Author(s): Muldera, Joselito e.; Nawata, Kouji; Takida, Yuma; de los Reyes, Alexander; Yadav, Deepika; Minamide, Hiroaki
  Source: OPTICS EXPRESS,33(10): MAY 19, 2025
  DOI: 10.1364/OE.560244
• Dependency of the Horizontal Resolution in the Charge Structure of a Convective Cloud in a Bulk Lightning Model
  Author(s): Asai, Soma; Sato, Yousuke
  Source: SOLA,21: APR 19, 2025
  DOI: 10.2151/sola.2025-026