8月25日-8月31日

Published Research Papers of RIKEN Researchers
total number of papers: 55

• TRsv: simultaneous detection of tandem repeat variations, structural variations, and short indels using long read sequencing data
  Author(s): Kosugi, Shunichi; Terao, Chikashi
  Source: GENOME BIOLOGY,26(1): AUG 20, 2025
  DOI: 10.1186/s13059-025-03718-z
• Image current detection of electrons in a room-temperature Paul trap
  Author(s): Taniguchi, Kento; Noguchi, Atsushi
  Source: PHYSICAL REVIEW A,112(2): AUG 14, 2025
  DOI: 10.1103/6mpr-5s2h
• Acetylated cellulose suppresses body mass gain through gut commensals consuming host-accessible carbohydrates
  Author(s): Takeuchi, Tadashi; Miyauchi, Eiji; Nakanishi, Yumiko; Ito, Yusuke; Kato, Tamotsu; Yaguchi, Katsuki; et al.
  Source: CELL METABOLISM,37(8): AUG 5, 2025
  DOI: 10.1016/j.cmet.2025.04.013
• Binding Energy of ³_ΛH and ⁴_ΛH via Image Analyses of Nuclear Emulsions Using Deep-Learning
  Author(s): Kasagi, A.; Saito, T. R.; Drozd, V; Ekawa, H.; Escrig, S.; Gao, Y.; et al.
  Source: PROGRESS OF THEORETICAL AND EXPERIMENTAL PHYSICS,2025(8): AUG, 2025
  DOI: 10.1093/ptep/ptaf097
• Enhanced TM-mode 3D coupled wave theory for photonic crystal surface-emitting terahertz quantum cascade lasers
  Author(s): Chen, Mingxi; Lin, Tsung-Tse; Wang, Li; Hirayama, Hideki; Otani, Chiko
  Source: JOURNAL OF THE OPTICAL SOCIETY OF AMERICA B-OPTICAL PHYSICS,42(9): SEP 1, 2025
  DOI: 10.1364/JOSAB.563319
• Kif11-haploinsufficient oocytes reveal spatially differential requirements for chromosome biorientation
  Author(s): Mishina, Tappei; Courtois, Aurelien; Yoshida, Shuhei; Asai, Kohei; Kiyonari, Hiroshi; Kitajima, Tomoya S.
  Source: EMBO REPORTS: AUG 20, 2025
  DOI: 10.1038/s44319-025-00539-w
• Three-dimensional analysis of intraepidermal nerve fibres and Langerhans cells in keloids with a focus on pruritus
  Author(s): Matsuzoe, Haruka; Toyoshima, Koh-ei; Takase, Miki; Tsuchiya, Ayako; Ikeda, Mika; Naitoh, Motoko; et al.
  Source: SCIENTIFIC REPORTS,15(1): AUG 19, 2025
  DOI: 10.1038/s41598-025-11674-8
• External Validation of a Risk Prediction Model for Atherosclerotic Cardiovascular Diseases in a Large National Health-Checkup and Claim Database
  Author(s): Honda, Takanori; Furuta, Yoshihiko; Maezono, Akihiro; Chen, Sanmei; Ishida, Yuki; Furuhashi, Hiroko; et al.
  Source: JOURNAL OF THE AMERICAN HEART ASSOCIATION,14(16): AUG 19, 2025
  DOI: 10.1161/JAHA.124.040386
• Simulating monitoring-induced topological phase transitions with small systems
  Author(s): Xie, Rui; Gneiting, Clemens; Zhou, Zheng-Yang; Chen, Ai-Xi
  Source: PHYSICAL REVIEW A,112(2): AUG 18, 2025
  DOI: 10.1103/yk7m-hcqr
• Compromise-free scaling of qubit speed and coherence
  Author(s): Carballido, Miguel J.; Svab, Simon; Eggli, Rafael S.; Patlatiuk, Taras; Kwon, Pierre Chevalier; Schuff, Jonas; et al.
  Source: NATURE COMMUNICATIONS,16(1): AUG 15, 2025
  DOI: 10.1038/s41467-025-62614-z
• sln-Topological Covalent Organic Frameworks with Shape Dimorphism and Dipolar Rotors
  Author(s): Wang, Xiaohan; Goto, Syunto; Ogawa, Takejiro; Miyazaki, Takuya; Kawamura, Kouki; Kosaka, Atsuko; et al.
  Source: JOURNAL OF THE AMERICAN CHEMICAL SOCIETY: AUG 14, 2025
  DOI: 10.1021/jacs.5c10010
• Glial reactivity and cognitive decline follow chronic heterochromatin loss in neurons
  Author(s): Newman, A. G.; Sharif, J.; Bessa, P.; Zaqout, S.; Brown, J. P.; Richter, D.; et al.
  Source: NATURE COMMUNICATIONS,16(1): AUG 8, 2025
  DOI: 10.1038/s41467-025-61319-7
• Correction of broadband terahertz electro-optic sampling with GaSe crystals
  Author(s): Ogawa, Kotaro; Kanda, Natsuki; Murotani, Yuta; Tanaka, Shunsuke; Yoshinobu, Jun; Matsunaga, Ryusuke
  Source: OPTICS LETTERS,50(15): AUG 1, 2025
  DOI: 10.1364/OL.567266
• Shear and bulk viscosity for a pure glue theory using an effective matrix model
  Author(s): Debnath, Manas; Ghosh, Ritesh; Haque, Najmul; Hidaka, Yoshimasa; Pisarski, Robert D.
  Source: PHYSICAL REVIEW D,112(1): JUL 28, 2025
  DOI: 10.1103/y9pd-lpv7
• Cross-scenario damaged building extraction network: Methodology, application, and efficiency using single-temporal HRRS imagery
  Author(s): Wang, Haifeng; He, Wei; Li, Zhuohong; Yokoya, Naoto
  Source: ISPRS JOURNAL OF PHOTOGRAMMETRY AND REMOTE SENSING,228: OCT, 2025
  DOI: 10.1016/j.isprsjprs.2025.06.028
• Spectrofluorimetric detection of bacitracin in various water samples based on the formation of yellow fluorescent nitrobenzofurazan derivative
  Author(s): Abdel-Lateef, Mohamed A.; Katamesh, Noha S.; Mohammed, Bassam Shaaban; Othman, Mahmoud H.; Darwish, Ibrahim A.
  Source: CHEMICAL PAPERS: AUG 25, 2025
  DOI: 10.1007/s11696-025-04279-y
• Tailoring approach for exploring vibrational features of large molecular systems: A short review
  Author(s): Khire, Subodh S.; Sahu, Nityananda; Gadre, Shridhar R.
  Source: JOURNAL OF CHEMICAL SCIENCES,137(3): AUG 20, 2025
  DOI: 10.1007/s12039-025-02392-9
• Circular photon drag effect in Dirac electrons by quantum geometry
  Author(s): Qu, Guanxiong
  Source: PHYSICAL REVIEW B,112(5): AUG 18, 2025
  DOI: 10.1103/dk8k-zm7b
• Variational Monte Carlo with neural network quantum states for a Yang-Mills matrix model
  Author(s): Bodendorfer, Norbert; Oktay, Onur; Gautam, Vaibhav; Hanada, Masanori; Rinaldi, Enrico
  Source: PHYSICAL REVIEW D,112(4): AUG 15, 2025
  DOI: 10.1103/t8m6-zhrm046010
• Density matrix renormalization group study of domain wall qubits
  Author(s): Qu, Guanxiong; Zou, Ji; Loss, Daniel; Hirosawa, Tomoki
  Source: PHYSICAL REVIEW B,112(5): AUG 13, 2025
  DOI: 10.1103/mpgp-pqk2
• Associations of family history of hypertension, genetic, and lifestyle risks with incident hypertension
  Author(s): Takase, Masato; Hirata, Takumi; Nakaya, Naoki; Kogure, Mana; Hatanaka, Rieko; Nakaya, Kumi; et al.
  Source: HYPERTENSION RESEARCH: AUG 13, 2025
  DOI: 10.1038/s41440-025-02314-9
• The distortion-push mechanism for the γ subunit rotation in F1-ATPase
  Author(s): Motohashi, Masahiro; Oide, Mao; Kobayashi, Chigusa; Jung, Jaewoon; Muneyuki, Eiro; Sugita, Yuji
  Source: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,122(33): AUG 12, 2025
  DOI: 10.1073/pnas.2502642122
• Isoform analysis of heterozygous putative splicing variants at the allele level using nanopore long-read sequencing
  Author(s): Ozaki, Kokoro; Irioka, Takashi; Noma, Shohei; Machida, Akira; Fukunaga, Moe; Murano, Tatsuro; et al.
  Source: SCIENTIFIC REPORTS,15(1): AUG 8, 2025
  DOI: 10.1038/s41598-025-14566-z
• Large emergent magneto-inductance effect in NiFeCu thin films on flexible polyimide substrates at room temperature
  Author(s): Zhang, Zijing; Hatakeyama, Tsunagu; Matsuzaka, Mizuki; Iimori, Riko; Matsushima, Yu; Funato, Takumi; et al.
  Source: AIP ADVANCES,15(8): AUG, 2025
  DOI: 10.1063/5.0280890
• Filling the blanks of checkerboard speech with noise: Evidence for phonemic restoration and maskinga)
  Author(s): Munechika, Koutaro; Ueda, Kazuo; Takeichi, Hiroshige; Hasuo, Emi; Remijn, Gerard B.
  Source: JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA,158(2): AUG, 2025
  DOI: 10.1121/10.0038977
• In Vitro Metabolic Profiling of 18 Semi-Synthetic Cannabinoids-Hexahydrocannabinol (HHC) and Its Analogs-with Identification in an Authentic Hexahydrocannabiphorol (HHCP) Urine Sample
  Author(s): Watanabe, Shimpei; Murakami, Takaya; Muratsu, Seiji; Takeshi, Saito; Seto, Yasuo
  Source: CLINICAL CHEMISTRY: AUG 25, 2025
  DOI: 10.1093/clinchem/hvaf087
• Identification of proliferating CD103⁺ CD8⁺ tissue-resident memory-like T-cells in villitis of unknown etiology in human placenta
  Author(s): Ohtani, Haruo; Fujiki, Yutaka; Takamura, Shiki; Miyazawa, Masaaki
  Source: VIRCHOWS ARCHIV: AUG 22, 2025
  DOI: 10.1007/s00428-025-04225-z
• A cerebello-thalamo-cortical pathway transmits reward-based post-error signals for motor timing correction during learning in male mice
  Author(s): Ako, Rie; Terada, Shin-Ichiro; Matsuzaki, Masanori
  Source: NATURE COMMUNICATIONS,16(1): AUG 18, 2025
  DOI: 10.1038/s41467-025-62831-6
• Extreme Anisotropies in Deep Layers of an Exploding Star: Overabundance of Cr in the Northeastern Jet of Cassiopeia A
  Author(s): Sapienza, Vincenzo; Miceli, Marco; Ono, Masaomi; Nagataki, Shigehiro; Yoshida, Takashi; Greco, Emanuele; et al.
  Source: ASTROPHYSICAL JOURNAL LETTERS,990(1): SEP 1, 2025
  DOI: 10.3847/2041-8213/adf6bd
• Transformation from a network to a close-packed structure in the structural models of CaO-SiO₂ binary glasses
  Author(s): Masuno, Atsunobu; Shiga, Motoki; Inoue, Hiroyuki
  Source: JOURNAL OF THE CERAMIC SOCIETY OF JAPAN,133(9): SEP, 2025
  DOI: 10.2109/jcersj2.25072
• Low-angular-momentum Black Hole Accretion: First General Relativistic Magnetohydrodynamic Evidence of Standing Shocks
  Author(s): Mao, Jirong; Dihingia, Indu K.; Mizuno, Yosuke; Nagataki, Shigehiro
  Source: ASTROPHYSICAL JOURNAL,990(1): SEP 1, 2025
  DOI: 10.3847/1538-4357/adf635
• ⁶³Fe-⁶³Mn: A Possible Strong Urca Pair and Its Potential Astrophysical Impact
  Author(s): Huang, Hao; Li, Kuoang; Liu, Zhong; Tang, Xiaodong; Shuai, Peng; Meisel, Zach
  Source: ASTROPHYSICAL JOURNAL,990(1): SEP 1, 2025
  DOI: 10.3847/1538-4357/adf43f
• Cell Permeability and Target Engagement of Middle-Sized Molecules Quantified by In-Cell NMR
  Author(s): Sukigara, Yota; Kamoshida, Hajime; Tokunaga, Yuji; Fujisaki, Miwa; Imai, Misaki; Kobayashi, Yoko; et al.
  Source: ANALYTICAL CHEMISTRY: AUG 25, 2025
  DOI: 10.1021/acs.analchem.5c01494
• Apoplastic metabolomics reveals sugars as mesophyll messengers regulating guard cell ion transport under red light
  Author(s): Zait, Yotam; Zhu, Mengmeng; Ando, Eigo; Zhou, Yunqing; Yaaran, Adi; Yon, Sunheng; et al.
  Source: NATURE PLANTS: AUG 25, 2025
  DOI: 10.1038/s41477-025-02078-7
• Construction of a New Drug and Agrochemical Candidates Screening Platform Utilizing Drug-Hypersensitive Fission Yeast to Discover Overlooked Natural Products
  Author(s): Kimishima, Aoi; Negami, Sota; Honma, Sota; Kawashima, Shigehiro A.; Yashiroda, Yoko; Fuji, Shin-ichi; et al.
  Source: JOURNAL OF NATURAL PRODUCTS: AUG 23, 2025
  DOI: 10.1021/acs.jnatprod.5c00598
• Expert opinions regarding the concept of blue carbon in seaweed systems
  Author(s): Nishihara, Gregory N.; Sato, Yoichi; Eger, Aaron M.; Gallagher, John Barry; Hurd, Catriona; Kawai, Hiroshi; et al.
  Source: PHYCOLOGICAL RESEARCH: AUG 23, 2025
  DOI: 10.1111/pre.70009
• Learning Green's function efficiently using low-rank approximations
  Author(s): Wimalawarne, Kishan; Suzuki, Taiji; Langer, Sophie
  Source: MACHINE LEARNING,114(10): AUG 22, 2025
  DOI: 10.1007/s10994-025-06845-7
• Deterministic Formation of Single Organic Color Centers in Single-Walled Carbon Nanotubes
  Author(s): Kozawa, Daichi; Shiota, Yuto; Wang, Mengyue; Kato, Yuichiro K.
  Source: NANO LETTERS: AUG 21, 2025
  DOI: 10.1021/acs.nanolett.5c02378
• Dynamically encircling an exceptional point through phase-tracked closed-loop control
  Author(s): Zhang, Sen; Huang, Yangyu; Yu, Lei; He, Kaixuan; Zhou, Ning; Xiao, Dingbang; et al.
  Source: COMMUNICATIONS PHYSICS,8(1): AUG 21, 2025
  DOI: 10.1038/s42005-025-02275-y
• Extremely stripped supernova reveals a silicon and sulfur formation site
  Author(s): Schulze, Steve; Gal-Yam, Avishay; Dessart, Luc; Miller, Adam A.; Woosley, Stan E.; Yang, Y., I; et al.
  Source: NATURE,644(8077): AUG 21, 2025
  DOI: 10.1038/s41586-025-09375-3
• Cyanobacterial diacylglycerol kinase is involved in membrane lipid synthesis and contributes to high-light acclimation of photosystem II
  Author(s): Takagi, Kensuke; Nakamura, Yuki; Jimbo, Haruhiko; Wada, Hajime
  Source: PLANT JOURNAL,123(4): AUG 20, 2025
  DOI: 10.1111/tpj.70368
• XXVI. The dust opacity spectral indices of protostellar envelopes bridge the gap between interstellar medium and disks
  Author(s): Cacciapuoti, L.; Testi, L.; Maury, A. J.; Chandler, C. J.; Sakai, N.; Ceccarelli, C.; et al.
  Source: ASTRONOMY & ASTROPHYSICS,700: AUG 19, 2025
  DOI: 10.1051/0004-6361/202554645
• Local Dzyaloshinskii-Moriya Interactions Driving Quasi-2D Magnetism in a Centrosymmetric Nanoskyrmion Material
  Author(s): Moody, S. H.; Bereciartua, P. J.; Francoual, S.; Littlehales, M. T.; Wilson, M. N.; Gomilsek, M.; et al.
  Source: PHYSICAL REVIEW LETTERS,135(7): AUG 14, 2025
  DOI: 10.1103/td2c-dxgj
• Comparative proteomics of HepG2 cells reveals NGLY1 as an important regulator of ferroptosis resistance and iron uptake
  Author(s): Emmerson, Stuart; Fujihira, Haruhiko; Suzuki, Takehiro; Dohmae, Naoshi; Greimel, Peter; Hirabayashi, Yoshio; et al.
  Source: PLOS ONE,20(8): AUG 14, 2025
  DOI: 10.1371/journal.pone.0328166
• Quantum tomography of a third-order exceptional point in a dissipative trapped ion
  Author(s): Chen, Y. -Y.; Li, K.; Zhang, L.; Wu, Y. -K.; Ma, J. -Y.; Yang, H. -X.; et al.
  Source: NATURE COMMUNICATIONS,16(1): AUG 12, 2025
  DOI: 10.1038/s41467-025-62573-5
• Effective training procedure for a simultaneous bimanual movement task in head-fixed mice
  Author(s): Tezuka, Kotaro; Osaki, Hironobu; Nishimura, Kaneyasu; Terada, Shin-Ichiro; Matsuzaki, Masanori; Masamizu, Yoshito
  Source: FRONTIERS IN NEURAL CIRCUITS,19: AUG 8, 2025
  DOI: 10.3389/fncir.2025.1633843
• Muon-Induced SEU Analysis and Simulation for Different Cell Types in 12-nm FinFET SRAMs, and 28-nm Planar SRAMs and Register Files
  Author(s): Gomi, Yuibi; Takami, Kazusa; Mizuno, Rurie; Niikura, Megumi; Yasuda, Ryuichi; Deng, Yifan; et al.
  Source: IEEE TRANSACTIONS ON NUCLEAR SCIENCE,72(8): AUG, 2025
  DOI: 10.1109/tns.2025.3542468
• FIR-GNN: A Graph Neural Network Using Flow Interaction Relationships for Intrusion Detection of Consumer Electronics in Smart Home Network
  Author(s): Fu, Mengyi; Wang, Pan; Liu, Shidong; Chen, Xuejiao; Zhou, Xiaokang
  Source: IEEE TRANSACTIONS ON CONSUMER ELECTRONICS,71(2): MAY, 2025
  DOI: 10.1109/tce.2025.3548798
• Synthesis of Telechelic-Type Polypeptides Functionalized with Aromatic Units and the Characterization of Their Structures and Thermal Properties
  Author(s): Ueno, Yusuke; Tsuchiya, Kousuke; Masunaga, Hiroyasu; Numata, Keiji
  Source: MACROMOLECULAR RAPID COMMUNICATIONS: AUG 26, 2025
  DOI: 10.1002/marc.202500499
• Smoking affects gut immune system of patients with inflammatory bowel diseases by modulating metabolomic profiles and mucosal microbiota
  Author(s): Miyauchi, Eiji; Taida, Takashi; Uchiyama, Kan; Nakanishi, Yumiko; Kato, Tamotsu; Koido, Shigeo; et al.
  Source: GUT: AUG 25, 2025
  DOI: 10.1136/gutjnl-2025-334922
• Isolation and Identification of High Biomass and Lipid Productivity Euglena Strain from Tropical Malaysian Environments for Enhancement of Biofuel Production
  Author(s): Aghazada, Sabrina; Suzuki, Kengo; Inaba, Yu; Atsuji, Kohei; Iwamoto, Koji
  Source: MARINE BIOTECHNOLOGY,27(5): AUG 23, 2025
  DOI: 10.1007/s10126-025-10503-3
• Bayesian Analysis of Bitcoin Volatility Using Minute-by-Minute Data and Flexible Stochastic Volatility Models
  Author(s): Nakakita, Makoto; Toyabe, Tomoki; Nakatsuma, Teruo
  Source: MATHEMATICS,13(16): AUG 21, 2025
  DOI: 10.3390/math13162691
• Enhanced mobility of p-type transparent semiconductor CuI thin films grown on thermal expansion matched substrates
  Author(s): Yasunami, Takahiro; Nakamura, Masao; Tokura, Yoshinori; Kawasaki, Masashi
  Source: APL MATERIALS,13(8): AUG, 2025
  DOI: 10.1063/5.0285140
• Hydrogen Gas Inhalation Improved Intestinal Microbiota in Ulcerative Colitis: A Randomised Double-Blind Placebo-Controlled Trial
  Author(s): Maruyama, Takafumi; Ishikawa, Dai; Kurokawa, Rina; Masuoka, Hiroaki; Nomura, Kei; Haraikawa, Mayuko; et al.
  Source: BIOMEDICINES,13(8): JUL 23, 2025
  DOI: 10.3390/biomedicines13081799
• NAS-DG: Ultra-Fast NAS via Uncertainty Modeling for Domain Generalization
  Author(s): Wakayama, Keigo; Kanamori, Takafumi
  Source: IEEE ACCESS,13: , 2025
  DOI: 10.1109/ACCESS.2025.3597980