10月6日-10月12日

Published Research Papers of RIKEN Researchers
total number of papers: 32

• Methane- and hydrogen-dependent prokaryotic deep biosphere at the Suwa Basin, Japan: impacts of hydrogeological processes on subsurface prokaryotic ecology at the boundary between the North American and the Eurasian Plates
  Author(s): Nishimura, Hiroki; Urai, Atsushi; Matsui, Yohei; Yoshimura, Toshihiro; Ogawara, Miyuki; Imachi, Hiroyuki; et al.
  Source: PROGRESS IN EARTH AND PLANETARY SCIENCE,12(1): OCT 1, 2025
  DOI: 10.1186/s40645-025-00740-4
• LLP1 is a pyrophosphatase involved in homeostasis/quality control of dolichol-linked oligosaccharide
  Author(s): Li, Sheng-Tao; Kamada, Katsuhiko; Honda, Akinobu; Seino, Junichi; Matsuda, Tsugiyo; Suzuki, Takehiro; et al.
  Source: JOURNAL OF CELL BIOLOGY,224(11): SEP 29, 2025
  DOI: 10.1083/jcb.202501239
• Moving objects detection based on tensor ring low rank decomposition
  Author(s): Chen, Ruixuan; Li, Xusheng; Chen, Chenda; Zhu, Shiyu; Chen, Qipeng; Cao, Jianting
  Source: SCIENTIFIC REPORTS,15(1): SEP 26, 2025
  DOI: 10.1038/s41598-025-18059-x
• Nonreciprocal quantum synchronization
  Author(s): Lai, Deng-Gao; Miranowicz, Adam; Nori, Franco
  Source: NATURE COMMUNICATIONS,16(1): SEP 26, 2025
  DOI: 10.1038/s41467-025-63408-z
• Effects of individual variation and seasonal vaccination on disease risks
  Author(s): Hart, William S.; Amin, Jina; Park, Hyeongki; Kitagawa, Kosaku; Jeong, Yong Dam; Kaye, Alexander R.; et al.
  Source: NATURE COMMUNICATIONS,16(1): SEP 26, 2025
  DOI: 10.1038/s41467-025-63375-5
• MitoDelta: identifying mitochondrial DNA deletions at cell-type resolution from single-cell RNA sequencing data
  Author(s): Nakagawa, Haruko; Shima, Yasuyuki; Sasagawa, Yohei; Nikaido, Itoshi
  Source: BMC GENOMICS,26(1): SEP 25, 2025
  DOI: 10.1186/s12864-025-11931-0
• From benchmarking alignment of genome assemblies to IMGT annotation: the paradigm of the bovine Bos taurus T cell receptor (TRG) locus
  Author(s): Zhou, Hao; Jiko, Chimari; Gerle, Christoph; Lefranc, Marie-Paule; Katoh, Kazutaka; Standley, Daron M.
  Source: BMC GENOMICS,26(1): SEP 25, 2025
  DOI: 10.1186/s12864-025-12081-z
• Biomarker genes for model-based prediction of drought-stress perception levels in rice
  Author(s): Yoshino, Kanami; Tanaka, Ryokei; Yoshida, Saki; Numajiri, Yuko; Teramoto, Shota; Kitomi, Yuka; et al.
  Source: BMC PLANT BIOLOGY,25(1): SEP 24, 2025
  DOI: 10.1186/s12870-025-07175-5
• Longitudinal single-cell analysis of glucagon-like peptide-2 treatment in patients with short bowel syndrome
  Author(s): Kudo, Yumi; Miyamoto, Kentaro; Suzuki, Shohei; Chida, Akihiko; Tojo, Anna; Hasegawa, Mai; et al.
  Source: JCI INSIGHT,10(18): SEP 23, 2025
  DOI: 10.1172/jci.insight.194497
• Trotterization is Substantially Efficient for Low-Energy States
  Author(s): Mizuta, Kaoru; Kuwahara, Tomotaka
  Source: PHYSICAL REVIEW LETTERS,135(13): SEP 23, 2025
  DOI: 10.1103/q87n-5xhz
• Differentiating anomalous and topological Hall effects using first-order reversal curve measurements
  Author(s): Stephen, Gregory M.; Van Haren, Ryan T.; Sharma, Vinay; Tai, Lixuan; Dai, Bingqian; Chi, Hang; et al.
  Source: PHYSICAL REVIEW B,112(9): SEP 22, 2025
  DOI: 10.1103/898w-d78g
• Effect of gliding arc discharge plasma on surface characteristics and biocompatibility of titanium alloy
  Author(s): Katahira, Kazutoshi; Takesue, Shogo; Mifune, Nobuhito; Komotori, Jun
  Source: JOURNAL OF MATERIALS RESEARCH AND TECHNOLOGY-JMR&T,38: SEP-OCT, 2025
  DOI: 10.1016/j.jmrt.2025.07.230
• Why epithelial cells collectively move against a traveling signal wave
  Author(s): Fukuyama, Tatsuya; Ebata, Hiroyuki; Yamamoto, Akihisa; Ienaga, Ryo; Kondo, Yohei; Tanaka, Motomu; et al.
  Source: SOFT MATTER: SEP 1, 2025
  DOI: 10.1039/d5sm00403a
• Unmeasured human transcription factor ChIP-seq data shape functional genomics and demand strategic prioritization
  Author(s): Tahara, Saeko; Ozaki, Haruka
  Source: BRIEFINGS IN FUNCTIONAL GENOMICS,24: , 2025
  DOI: 10.1093/bfgp/elaf016
• Determining the Molecular Orbital Symmetry of Liquid Molecules by Soft X-ray Spectroscopy
  Author(s): Horikawa, Yuka
  Source: BUNSEKI KAGAKU,74(9): , 2025
  
• Fabrication and evaluation of graphene oxide-enhanced polymer composites for effective radiation shielding in medical applications
  Author(s): Rusli, Halimi Muhamad; Razab, Mohammad Khairul Azhar Abdul; Tajudin, Suffian Mohamad; Aziz, Mohd Zahri Abdul; Nawi, Norazlina Mat; Sulaiman, Muhammad Azwadi; et al.
  Source: RADIATION PHYSICS AND CHEMISTRY,239: FEB, 2026
  DOI: 10.1016/j.radphyschem.2025.113331
• Observing Supernova Neutrino Light Curves with Super-Kamiokande. VI. A Practical Data Analysis Technique Considering Realistic Experimental Backgrounds
  Author(s): Nakanishi, Fumi; Nakazato, Ken'ichiro; Harada, Masayuki; Koshio, Yusuke; Akaho, Ryuichiro; Ashida, Yosuke; et al.
  Source: ASTROPHYSICAL JOURNAL,992(1): OCT 10, 2025
  DOI: 10.3847/1538-4357/adfcca
• Topical review: the nature of the ground state and possibility of a quantum spin liquid in 1T metal dichalcogenides
  Author(s): Butler, C. J.; Naritsuka, M.; Hanaguri, T.
  Source: JOURNAL OF PHYSICS-CONDENSED MATTER,37(40): OCT 6, 2025
  DOI: 10.1088/1361-648X/ae0779
• Retrieval from vacuolar and endosomal compartments underpinning the neofunctionalization of SNARE in plants
  Author(s): Feng, Yihong; Ebine, Kazuo; Ito, Yoko; Kanazawa, Takehiko; Sawasaki, Tatsuya; Nozawa, Akira; et al.
  Source: NATURE PLANTS: OCT 3, 2025
  DOI: 10.1038/s41477-025-02115-5
• Anisotropic magnetoresistance in non-magnetic Pb₂Ru₂O_6.5 interfaced with spin ice insulator Ho₂Sn₂O₇
  Author(s): Fujita, T. C.; Senzaki, S.; Kawasaki, M.
  Source: APL MATERIALS,13(10): OCT, 2025
  DOI: 10.1063/5.0271982
• Nonperturbative Formulation of Resonances in Quantum Mechanics Based on Exact WKB Method
  Author(s): Morikawa, Okuto; Ogawa, Shoya
  Source: PROGRESS OF THEORETICAL AND EXPERIMENTAL PHYSICS,2025(10): OCT, 2025
  DOI: 10.1093/ptep/ptaf120
• Quantifying Cell Membrane Permeability of Small to Mid-Size Drugs Using Quick Osmotic Cytoplasm Extraction
  Author(s): Igari, Serena; Sakai, Daiki; Liu, Chenchen; Torikai, Kohei; Matsumori, Nobuaki; Kawai, Takayuki
  Source: ANALYTICAL CHEMISTRY: OCT 1, 2025
  DOI: 10.1021/acs.analchem.5c01064
• H3K27 and H3K9 methylation mask potential CTCF binding sites to maintain 3D genome integrity
  Author(s): Fukuda, Kei; Shimura, Chikako; Shinkai, Yoichi
  Source: GENOME RESEARCH,35(10): OCT, 2025
  DOI: 10.1101/gr.280732.125
• Discrete-time gradient flows in Gromov hyperbolic spaces
  Author(s): Ohta, Shin-Ichi
  Source: ISRAEL JOURNAL OF MATHEMATICS: SEP 29, 2025
  DOI: 10.1007/s11856-025-2809-z
• QuantumToolbox.jl: An efficient Julia framework for simulating open quantum systems
  Author(s): Mercurio, Alberto; Huang, Yi-Te; Cai, Li-Xun; Chen, Yueh-Nan; Savona, Vincenzo; Nori, Franco
  Source: QUANTUM,9: SEP 29, 2025
  
• Enhanced specific capacitance of supercapacitors using wide band gap NdCrO3 and NdCrO3/graphene oxide nanocomposites
  Author(s): Siddiqui, Rabia; Rani, Malika; Ibrahim, Akram; Shah, Aqeel Ahmed; Razaq, Aamir; Bano, Shehar; et al.
  Source: JOURNAL OF RARE EARTHS,43(10): OCT, 2025
  DOI: 10.1016/j.jre.2024.08.023
• Spatiotemporal mapping of alloy mesostructure dynamics via multimodal coherent X-ray diffraction imaging
  Author(s): Takazawa, Shuntaro; Ninomiya, Kakeru; Ha, Minh-Quyet; Vu, Tien-Sinh; Sasaki, Yuhei; Abe, Masaki; et al.
  Source: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,122(38): SEP 23, 2025
  DOI: 10.1073/pnas.2513369122
• The F54L mutation of Thioredoxin shows protein instability and increased fluctuations of the catalytic center
  Author(s): Baba, Takumi; Ueno, Go; Ohe, Chika; Saji, Shuku; Yamamoto, Sachiko; Yamamoto, Masaki; et al.
  Source: BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS,1869(12): DEC, 2025
  DOI: 10.1016/j.bbagen.2025.130860
• Germline transmission of cryopreserved mouse spermatogonial stem cells maintained on the International Space Station
  Author(s): Kanatsu-Shinohara, Mito; Yamamoto, Takuya; Shiromoto, Yusuke; Morimoto, Hiroko; Liu, Tianjiao; Yamamori, Tohru; et al.
  Source: STEM CELL REPORTS,20(9): SEP 9, 2025
  DOI: 10.1016/j.stemcr.2025.102602
• Inhibition of N-myristoyltransferase in pluripotent stem cells promotes the naive state in mice and elicits trophectoderm and primitive endoderm markers in humans
  Author(s): Yoshida, Junko; Watanabe, Hitomi; Yamauchi, Kaori; Nishikubo, Takumi; Isotani, Ayako; Ohtsuka, Satoshi; et al.
  Source: STEM CELL REPORTS,20(9): SEP 9, 2025
  DOI: 10.1016/j.stemcr.2025.102610
• Time-Resolved Leader Spectra of Downward Terrestrial Gamma-Ray Flashes Observed at the Telescope Array Surface Detector
  Author(s): Kieu, N.; Abbasi, R. U.; Saba, M. M. F.; Krehbiel, P. R.; Gordillo-Vazquez, F. J.; Stanley, M. A.; et al.
  Source: JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES,130(16): AUG 16, 2025
  DOI: 10.1029/2025JD043812
• Comparative analysis of autofluorescence spectra in a filet of three fish species during chilled storage for raw consumption
  Author(s): Miyazaki, Kaho; Fujita, Hideaki; Yasuda, Kyota; Saiki, Koji; Watanabe, Tomonobu M.
  Source: FOOD CHEMISTRY,493: NOV 30, 2025
  DOI: 10.1016/j.foodchem.2025.145577