11月17日-11月23日

Published Research Papers of RIKEN Researchers
total number of papers: 48

• Corrigendum to "Sparse kernel k-means for high-dimensional data" Pattern Recognition 144 (2023) 109873
  Author(s): Guan, Xin; Terada, Yoshikazu
  Source: PATTERN RECOGNITION,172: APR, 2026
  DOI: 10.1016/j.patcog.2025.112536
• Ultralow-temperature cryogenic transmission electron microscopy using a new helium flow cryostat stage
  Author(s): Kim, Young-Hoon; Yasin, Fehmi Sami; Kim, Na Yeon; Birch, Max; Yu, Xiuzhen; Kikkawa, Akiko; et al.
  Source: ULTRAMICROSCOPY,280: FEB, 2026
  DOI: 10.1016/j.ultramic.2025.114263
• Comparative Genomic Analysis Identifies FleQ and GcbB as Virulence-Associated Factors in Pseudomonas syringae pv. tabaci Strains
  Author(s): Hidayat, Muhammad Taufiq; Yoshioka, Kei; Nishimura, Takafumi; Asai, Shuta; Masuda, Sachiko; Shirasu, Ken; et al.
  Source: MOLECULAR PLANT PATHOLOGY,26(11): NOV 12, 2025
  DOI: 10.1111/mpp.70168
• TTNOpt: Tree tensor network package for high-rank tensor compression
  Author(s): Watanabe, Ryo; Manabe, Hidetaka; Hikihara, Toshiya; Ueda, Hiroshi
  Source: COMPUTER PHYSICS COMMUNICATIONS,319: FEB, 2026
  DOI: 10.1016/j.cpc.2025.109918
• Discovery of Proton-Rich Radioactive Isotopes in the Z=60 Region Produced by the Projectile Fragmentation of a 345-MeV/Nucleon ²³⁸U Beam
  Author(s): Suzuki, H.; Fukuda, N.; Takeda, H.; Shimizu, Y.; Yoshimoto, M.; Togano, Y.; et al.
  Source: PROGRESS OF THEORETICAL AND EXPERIMENTAL PHYSICS,2025(11): NOV, 2025
  DOI: 10.1093/ptep/ptaf149
• Key Nutrient Drivers for Biomass and C-Phycocyanin Production in Spirulina sp. Revealed by Media Optimization
  Author(s): Nurjannah, Ivani; Subroto, Toto; Hardianto, Ari; Adinisa, Lucy; Mochida, Keiichi
  Source: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES,26(21): OCT 27, 2025
  DOI: 10.3390/ijms262110425
• Anomalous bending and transmission at the Bragg condition by crystal stacking fault
  Author(s): Kohmura, Yoshiki; Sawada, Kei; Takano, Hidekazu; Ishikawa, Tetsuya
  Source: PHYSICAL REVIEW MATERIALS,9(10): OCT 23, 2025
  DOI: 10.1103/jq52-2dmm
• Trans-Synaptic Virus Tracing Reveals Reciprocal Connections of the Interpeduncular Nucleus With the Mood, Exteroceptive, Interoceptive, and Motor Control Systems
  Author(s): Wong, Audrey K.; Cherng, Bor-Wei; Kakinuma, Hisaya; Wyart, Claire; Okamoto, Hitoshi
  Source: JOURNAL OF COMPARATIVE NEUROLOGY,533(11): NOV 14, 2025
  DOI: 10.1002/cne.70105
• Hopping mechanism and Griffiths singularity in La_0.7Ca_0.25Sr_0.05MnO₃/Mn₃O₄ composite nanoparticles
  Author(s): Winarsih, Suci; Jatmika, Jumaeda; Imaduddin, Agung; Watanabe, Isao
  Source: JOURNAL OF APPLIED PHYSICS,138(18): NOV 14, 2025
  DOI: 10.1063/5.0284702
• Conformational alteration of DOCK5•ELMO1 signalosome on lipid membrane
  Author(s): Shinoda, Takehiro; Katsura, Kazushige; Ishizuka-Katsura, Yoshiko; Hanada, Kazuharu; Yonemochi, Mayumi; Miyamoto, Yuki; et al.
  Source: COMMUNICATIONS BIOLOGY,8(1): NOV 13, 2025
  DOI: 10.1038/s42003-025-09113-5
• Nickel Incorporation into Fresh Iron Sulfide Precipitates Modulates Selectivity in Nitrite, Carbon Dioxide, and Proton Reduction
  Author(s): Garibello, C. Felipe; McGlynn, Shawn Erin; Li, Yamei; Malherbe, Francois; Eldridge, Daniel; Simonov, Alexandr N.; et al.
  Source: INORGANIC CHEMISTRY: NOV 13, 2025
  DOI: 10.1021/acs.inorgchem.5c03810
• Nonlinear Chiral Response from Linearly Achiral Membrane Metasurfaces
  Author(s): Tonkaev, Pavel; Zhuang, Yeqi; Kim, Donghwee; Toftul, Ivan; Yamaguchi, Takeshi; Li, Kingfai; et al.
  Source: NANO LETTERS: NOV 12, 2025
  DOI: 10.1021/acs.nanolett.5c04214
• Design of Polymeric Nickel Catalysts for Suzuki-Miyaura Type Cross-Coupling Reaction Using Machine Learning
  Author(s): Takaoka, Sho; Zhang, Zhenzhong; Yamada, Yoichi M. A.; Kaneko, Hiromasa
  Source: ACS APPLIED POLYMER MATERIALS: NOV 10, 2025
  DOI: 10.1021/acsapm.5c02957
• Astaxanthin Overproduction Enhanced by Metabolomics-Guided Rational Metabolic Engineering in Synechococcus sp. PCC 7002
  Author(s): Ida, Kousuke; Tanaka, Kenya; Kato, Yuichi; Koike, Nobuaki; Horie, Yoji; Matsuda, Mami; et al.
  Source: ACS SYNTHETIC BIOLOGY: NOV 10, 2025
  DOI: 10.1021/acssynbio.5c00490
• High-sensitive mechanical response in metal-insulator nanogranular films with large gauge factor
  Author(s): Uchiyama, Tomoharu; Wang, Cheng; Hasegawa, Yui; Kobayashi, Nobukiyo; Masumoto, Hiroshi; Takahashi, Saburo; et al.
  Source: SCIENTIFIC REPORTS,15(1): NOV 10, 2025
  DOI: 10.1038/s41598-025-24084-7
• High-energy interstellar isomers: cis-N-methylformamide in the G+0.693-0.027 molecular cloud
  Author(s): Zeng, S.; Rivilla, V. M.; Sanz-Novo, M.; Melosso, M.; Jimenez-Serra, I.; Colzi, L.; et al.
  Source: ASTRONOMY & ASTROPHYSICS,703: NOV 6, 2025
  DOI: 10.1051/0004-6361/202556709
• DiffBreed: automatic differentiation enables efficient gradient-based optimization of breeding strategies
  Author(s): Hamazaki, Kosuke; Iwata, Hiroyoshi; Tsuda, Koji
  Source: BIOINFORMATICS,41(11): NOV, 2025
  DOI: 10.1093/bioinformatics/btaf586
• Chemical templates of the Central Molecular Zone: Shock and protostellar object signatures under Galactic Center conditions
  Author(s): Dutkowska, Katarzyna M.; Vermarien, Gijs; Viti, Serena; Jimenez-Serra, Izaskun; Colzi, Laura; Busch, Laura A.; et al.
  Source: ASTRONOMY & ASTROPHYSICS,703: NOV, 2025
  DOI: 10.1051/0004-6361/202556188
• Thermally quenched metastable phase in the Ising model with competing interactions
  Author(s): Oike, Hiroshi; Suwa, Hidemaro; Takahashi, Yasunori; Kagawa, Fumitaka
  Source: PHYSICAL REVIEW B,112(6): AUG 6, 2025
  DOI: 10.1103/ydc4-cfrm
• Sparse linear regression when noises and covariates are heavy-tailed and contaminated by outliers
  Author(s): Sasai, Takeyuki; Fujisawa, Hironori
  Source: ELECTRONIC JOURNAL OF STATISTICS,19(2): , 2025
  DOI: 10.1214/25-EJS2448
• TAL3x3: A Dataset and Algorithm for Temporal Action Localization in 3x3 Basketball
  Author(s): Hu, Qingrui; Yeung, Calvin; Yin, Li; Fujii, Keisuke
  Source: IEEE ACCESS,13: , 2025
  DOI: 10.1109/ACCESS.2025.3624826
• Dual-function nanographene-peptide conjugates enable super-resolution mitochondria imaging and targeted DNA delivery in plants
  Author(s): Miyamoto, Takaaki; Zhao, Hao; Zhu, Xingfu; Bonn, Mischa; Liu, Xiaomin; Narita, Akimitsu; et al.
  Source: CARBON,247: FEB, 2026
  DOI: 10.1016/j.carbon.2025.120994
• Expanded mosaic chromosomal alterations, frailty, and risks of all-cause and cause-specific mortality among Chinese and the UK adults: evidence from two prospective cohorts
  Author(s): Song, Mingyu; Shao, Zilun; Han, Yuting; Zhao, Yuxuan; Lv, Jun; Yu, Canqing; et al.
  Source: BMC MEDICINE,23(1): NOV 11, 2025
  DOI: 10.1186/s12916-025-04452-w
• Synthesis and characterization of a diarylstannylene bearing (MeO)EPind groups and its oxidation reactions
  Author(s): Ueno, Yuto; Imai, Mizuki; Maehara, Yuki; Matsui, Kotomi; Kawase, Yuria; Ota, Kei; et al.
  Source: BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN,98(11): NOV, 2025
  DOI: 10.1093/bulcsj/uoaf104
• Development of a method for quantifying metabolites in Escherichia coli colonies using hyperspectral imaging
  Author(s): Takama, Manami; Suematsu, Takatoshi; Okano, Takayuki; Asamizu, Shumpei; Bamba, Takahiro; Hasunuma, Tomohisa
  Source: JOURNAL OF BIOSCIENCE AND BIOENGINEERING,140(6): DEC, 2025
  DOI: 10.1016/j.jbiosc.2025.09.005
• Positive magnetoconductance in SrVO3 double quantum wells with a magnetic EuTiO3 barrier
  Author(s): Takahara, N.; Takahashi, K. S.; Tokura, Y.; Kawasaki, M.
  Source: PHYSICAL REVIEW B,112(16): OCT 15, 2025
  DOI: 10.1103/kmj2-rs3n
• Diverse combination of factors associated with the development of diabetic kidney disease among data-driven diabetes subtypes: analysis of the J-DREAMS registry
  Author(s): Watanabe-Shimoji, Kiriko; Tanabe, Hayato; Ohsugi, Mitsuru; Kawakami, Eiryo; Tanaka, Kenichi; Kazama, Junichiro J.; et al.
  Source: DIABETOLOGIA: NOV 17, 2025
  DOI: 10.1007/s00125-025-06594-1
• Long-read sequencing reveals genomic and epigenomic variation in the dark genome of human Alzheimer's disease
  Author(s): Ramirez, Paulino; Sun, Wenyan; Dehkordi, Shiva Kazempour; Zare, Habil; Pascarella, Giovanni; Carninci, Piero; et al.
  Source: ALZHEIMERS & DEMENTIA,21(11): NOV 14, 2025
  DOI: 10.1002/alz.70852
• Plant Robotics for Sustainable and Environmentally Friendly Robots: Insights from Actuation Characteristics
  Author(s): Murakami, Kazuya; Sato, Misao; Ikeda, Yu; Horii, Tatsuhiro; Nagatoshi, Yukari; Fujita, Miki; et al.
  Source: ADVANCED SCIENCE: NOV 14, 2025
  DOI: 10.1002/advs.202512896
• High-resolution monitoring and modeling of subsurface CO2 dynamics in soybean field
  Author(s): Hamamoto, Shoichiro; Saito, Hirotaka; Matsunami, Hisaya; Nihei, Naoto; Ichihashi, Yasunori; Tatsuno, Takahiro; et al.
  Source: GEODERMA,463: NOV, 2025
  DOI: 10.1016/j.geoderma.2025.117578
• Transcription of Nitrogen Fixation Genes Is Enhanced at Unfavorably High Oxygen Concentrations for Diazotrophic Growth in a Methane-oxidizing Bacterium
  Author(s): Abdela, Argen Adem; Shinjo, Rina; Watanabe, Takeshi; Asakawa, Susumu; Masuda, Sachiko; Shibata, Arisa; et al.
  Source: MICROBES AND ENVIRONMENTS,40(4): , 2025
  DOI: 10.1264/jsme2.ME25032
• Expanding the Eco-collection of Methane-oxidizing Bacteria Inhabiting Rice Roots: Cultivation, Isolation, and Genomic Characterization of Isolates
  Author(s): Oe, Fumika; Shinjo, Rina; Masuda, Sachiko; Shibata, Arisa; Shirasu, Ken; Hashimoto, Shun; et al.
  Source: MICROBES AND ENVIRONMENTS,40(4): , 2025
  DOI: 10.1264/jsme2.ME25012
• The exacerbating role of Ras guanyl-releasing protein 1 in idiopathic inflammatory myopathies
  Author(s): Kise, Marina; Shimamura, Miku; Umezawa, Natsuka; Tanaka, Nao; Da, Rihan; Li, Shiyao; et al.
  Source: CLINICAL IMMUNOLOGY,282: JAN, 2026
  DOI: 10.1016/j.clim.2025.110636
• DNA methylation dictates histone modifications in developing male germ cells in the mouse
  Author(s): Sugimoto, Hirotaka; Kawase, Masaki; Ichiyanagi, Kenji
  Source: NUCLEIC ACIDS RESEARCH,53(21): NOV 26, 2025
  DOI: 10.1093/nar/gkaf1240
• Genomic Profiles of Pathogenic and Moderate-Penetrance Germline Variants Associated With Risk of Early-Onset Lung Adenocarcinoma
  Author(s): Cho, Hourin; Shiraishi, Kouya; Sunami, Kuniko; Momozawa, Yukihide; Yoshida, Tatsuya; Matsumoto, Shingo; et al.
  Source: JOURNAL OF THORACIC ONCOLOGY,20(11): NOV, 2025
  DOI: 10.1016/j.jtho.2025.06.005
• Gene-scale in vitro reconstitution reveals histone acetylation directly controls chromatin architecture
  Author(s): Fukai, Yohsuke T.; Kujirai, Tomoya; Wakamori, Masatoshi; Kanamura, Setsuko; Yamauchi, Lisa; Zeraati, Somayeh; et al.
  Source: SCIENCE ADVANCES,11(47): NOV 19, 2025
  DOI: 10.1126/sciadv.adx9282
• Floquet Theory and Applications in Open Quantum and Classical Systems
  Author(s): Sato, Masahiro; Ikeda, Tatsuhiko N.
  Source: JOURNAL OF THE PHYSICAL SOCIETY OF JAPAN,94(11): NOV 15, 2025
  DOI: 10.7566/JPSJ.94.111007
• Multifunctional N-substituted 2-pyridylbenzothiazole derivatives: singlet oxygen generation, protein binding, and photoactivated anticancer and antibacterial activities
  Author(s): Mohamed, Hanan A.; Abdel-Shafi, Ayman A.; Miyatake, Hideyuki; El-Khouly, Mohamed E.; Nassrallah, Amr A.
  Source: RSC ADVANCES,15(52): NOV 11, 2025
  DOI: 10.1039/d5ra06375b
• Reorganization of DNA loops by competition between condensin I and a linker histone
  Author(s): Yamamoto, Tetsuya; Shintomi, Keishi; Hirano, Tatsuya
  Source: BIOPHYSICAL JOURNAL,124(21): NOV 4, 2025
  DOI: 10.1016/j.bpj.2025.09.002
• A cross-scale analysis for the determinants of bonding dynamics on the distributions of rolling velocities of cells in microvessels
  Author(s): Li, Yonggang; Li, Satoshi; Sugiyama, Kazuyasu; Noda, Shigeho; Rajagopal, Vijay; Lee, Peter V. S.; et al.
  Source: BIOPHYSICAL JOURNAL,124(21): NOV 4, 2025
  DOI: 10.1016/j.bpj.2025.09.011
• Generation of germinal-vesicle oocytes from mouse embryonic stem cells under an ovarian soma-free condition
  Author(s): Nosaka, Yoshiaki; Nagano, Masahiro; Yabuta, Yukihiro; Nakakita, Baku; Nagaoka, So I.; Okamoto, Ikuhiro; et al.
  Source: DEVELOPMENTAL CELL,60(21): NOV 3, 2025
  DOI: 10.1016/j.devcel.2025.06.008
• Spermatocyte injection into meiotic oocytes rescues diplotene, but not pachytene, arrest in azoospermic mutant mice
  Author(s): Ogonuki, Narumi; Hino, Toshiaki; Fujiwara, Yasuhiro; Osawa, Yuki; Mizuno, Seiya; Sugiyama, Fumihiro; et al.
  Source: HUMAN REPRODUCTION OPEN,2025(4): , 2025
  DOI: 10.1093/hropen/hoaf067
• Development of precession Lorentz transmission electron microscopy
  Author(s): Hayashi, Shunsuke; Han, Dongxue; Tsuji, Hidenori; Ishizaka, Kyoko; Nakamura, Asuka
  Source: ULTRAMICROSCOPY,280: FEB, 2026
  DOI: 10.1016/j.ultramic.2025.114276
• Selective agonism of GPR34 stimulates microglial uptake and clearance of amyloid β fibrils
  Author(s): Etani, Hayato; Takatori, Sho; Wang, Wenbo; Omi, Jumpei; Amiya, Yusuke; Akahori, Aika; et al.
  Source: ALZHEIMERS RESEARCH & THERAPY,17(1): NOV 20, 2025
  DOI: 10.1186/s13195-025-01891-8
• mTORC1-independent IgA production: a unique pathway for gut immune homeostasis
  Author(s): Ohtani, Masashi; Fujii, Hideki; Watanabe, Takashi; Ohara, Osamu; Maruya, Mikako; Fagarasan, Sidonia; et al.
  Source: INTERNATIONAL IMMUNOLOGY: NOV 20, 2025
  DOI: 10.1093/intimm/dxaf063
• Supramolecular Ionic Polymerization: Cellulose-Based Supramolecular Plastics with Broadly Tunable Mechanical Properties
  Author(s): Chen, Zhenghong; Hong, Yang; Inuzuka, Hiroyuki; Mizukami, Kiichi; Aida, Takuzo
  Source: JOURNAL OF THE AMERICAN CHEMICAL SOCIETY: NOV 19, 2025
  DOI: 10.1021/jacs.5c16680
• MoG+3.0: expanded structural variant visualization and integration of genomic data from five newly analyzed mouse strains
  Author(s): Takada, Toyoyuki; Miyazawa, Hideyuki; Yamagata, Masanobu; Tamura, Masaru; Yoshiki, Atsushi; Toyoda, Atsushi; et al.
  Source: MAMMALIAN GENOME,37(1): NOV 19, 2025
  DOI: 10.1007/s00335-025-10168-2
• Somatostatin receptor subtypes 1 and 4 regulate neprilysin, the major amyloid-β degrading enzyme in brain
  Author(s): Nilsson, Per; Sorgjerd, Karin; Kakiya, Naomasa; Sasaguri, Hiroki; Watamura, Naoto; Johansson, Lovisa; et al.
  Source: JOURNAL OF ALZHEIMERS DISEASE: NOV 19, 2025
  DOI: 10.1177/13872877251392782